Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq41 114 1e-20 seq152 113 4e-20 >seq41 Length=668564 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| ||| || || || ||||| || || || || || | || || Sbjct 27353 CACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCCTC 27294 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || || ||||||||||| | || | || ||| |||||| Sbjct 27293 CAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 27234 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || ||||| |||||||| |||| ||||| | | Sbjct 27233 GATCTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGGGTGATGGTCT 27175 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || ||||| || || ||||||||||||||| Sbjct 27174 TCCCTGTCAGGGTCTTGACAAAGATTTGCATC 27143 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||| || || || ||||| || || || || || | || || Sbjct 28512 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCCTC 28453 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || |||||||| || || ||||||||||| | || | || ||| |||||| Sbjct 28452 CAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 28393 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | | ||| | | | || ||||||||||| || |||| || || | | Sbjct 28392 GATCTT-TGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGACCTCCAGGGTAATGGTCT 28334 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || |||||||| ||||| Sbjct 28333 TCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| ||||||| ||| || || || || || || ||||| || || Sbjct 30024 CCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCC 29965 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || ||||| || || ||||||||||| | || Sbjct 29964 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29905 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| | | || |||| | | | || ||||| ||||| || Sbjct 29904 ATGCCTTCCTTGTCC-TGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGAC 29846 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || |||||||| || |||||||| |||||| Sbjct 29845 CTCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCATC 29797 >seq152 Length=376403 Score = 113 bits (124), Expect = 4e-20 Identities = 173/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||| | || ||| || | || || || |||| ||| || || ||| || Sbjct 331411 TAACAAAAATCTG--CATGCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTT 331468 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || || || ||||| || || || || | || || ||||||||||| ||||| ||||| Sbjct 331469 CTGGATGTTGTAATCAGCCAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAG 331528 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 |||||| ||||||| || | || ||| ||||| || || || | | | | Sbjct 331529 ACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGAT 331588 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 || ||||| |||||||| |||| ||| ||| | || || |||| ||||| ||||| || Sbjct 331589 GGTGTCGCTGGACTCCACTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAAT 331648 Query 39279 TTGCAT 39284 |||||| Sbjct 331649 TTGCAT 331654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | ||||||||| || ||| ||| ||||| || ||||| || || Sbjct 329361 CCACCTCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCC 329420 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | ||| || || ||||| ||||||||||||||||| | || Sbjct 329421 AGGGTCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 329480 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| || || || ||| |||| | | | || || || ||||| || Sbjct 329481 ATACCCTCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACC 329540 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || |||| || |||| || || |||||||||||||| Sbjct 329541 TCAAGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429531198275663