Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq41 120 2e-22 seq152 95.1 8e-15 >seq41 Length=668564 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || |||||| | |||||||| || | Sbjct 25084 ATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCTTCA 25143 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| || ||| | || ||||| || Sbjct 25144 GATACAATTGACAATGTGAAGGCCAAGA-TTCAAGACAAGGAGGGTATTCCTCCAGACCA 25202 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || ||||| || || ||||| || || | |||||| ||| |||||||| Sbjct 25203 GCAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTACAA 25262 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||||||| || | |||||||| | | ||||||||||| Sbjct 25263 TATTCAAAAAGAGTCGACTCTGCATTTAGTCCTTCGTTTGCGAGGAGG 25310 >seq152 Length=376403 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || || || || || | ||||| || |||| Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || || || ||| Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||||||||| ||||| || | || || | | ||||||||| Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAAC 331475 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| | ||||| | ||||| || || Sbjct 331474 ATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGG 331428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998267277508