Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq152 143 6e-29 seq41 134 3e-26 >seq152 Length=376403 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || || ||||| || || || |||| |||||||| |||| || | ||||| || Sbjct 331446 ACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATCCTCC 331505 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 ||||| || || || || ||||| || ||||||||||| || || || ||||||||||| Sbjct 331506 AGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGA 331565 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| |||||| ||||||||||| || ||||| || ||||| || ||||| Sbjct 331566 ATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAATAGTCTTA 331625 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||||||| | || | |||||| Sbjct 331626 CCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | || | ||| || || || || | ||||| |||||||| || Sbjct 332441 ACGAAGGCGCAGCACCAAATGTAAAGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGT 332500 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || |||||||| || || ||||||||||| || ||||| || Sbjct 332501 CCGGCCATCTTCCAGCTGTTTACCAGCGAAAATCAGGCGTTGTTGGTCCGGTGGAATCCC 332560 Query 225612 T 225612 | Sbjct 332561 T 332561 >seq41 Length=668564 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || ||||| || |||||||| | ||||||||| || | || | ||||| Sbjct 25295 AGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCC 25236 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| || || || ||||| ||||| || |||||||| ||||||||| Sbjct 25235 TCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCT 25176 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || || ||||| | || || || || ||||| ||| Sbjct 25175 TGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTC 25116 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || |||| ||||| Sbjct 25115 TTCCCAGTCAGTGTTTT 25099 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || || |||| || || || |||| || Sbjct 27364 CGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTG 27305 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||||||||| || ||||| || || || ||||| ||||| || || Sbjct 27304 CGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCC 27245 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||||||| ||| || ||||||||||| || ||||| || | Sbjct 27244 TCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGG 27185 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| || || | || | |||||| Sbjct 27184 GTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || || || || ||||| || |||| || || || |||| || | ||||| || Sbjct 30006 ACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATCCTCC 29947 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 ||||||||||| || ||||| || || || ||||| ||||| || ||||||||||| || Sbjct 29946 AGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGA 29887 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||| ||| ||||||||||| || || || || | ||||| ||||| Sbjct 29886 ATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTC 29827 Query 225685 CCCGTCA 225691 || |||| Sbjct 29826 CCTGTCA 29820 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || || |||| || || || |||| || Sbjct 28523 CGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTG 28464 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||||||||| || ||||| || || || ||||| ||||| || || Sbjct 28463 CGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCC 28404 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||||||| ||| || ||||||||||| | || || || | Sbjct 28403 TCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGACCTCCAGG 28344 Query 225673 GTGATCGTCTTGCCCGTCA 225691 || || ||||| || |||| Sbjct 28343 GTAATGGTCTTCCCTGTCA 28325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192489166629194