Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq61 84.2 3e-11 >seq61 Length=579265 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 78174 TATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTT 78233 || |||||||||| ||| | || | || ||| |||| || || || || | || || Sbjct 233987 TACCTGGCGGTGTCATTGAAGACGCGCAGCATAGGAACGATCCCATTGGAGTTGCCGTTC 233928 Query 78234 GTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCT 78293 ||||| || ||||| || || || || ||| ||||| | ||| || ||||| Sbjct 233927 GTTCCCCGGATGTAACTACCCACAGCTCGGATGTTATGGATGGAAAGCCCAATCCCTCCA 233868 Query 78294 GCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCA 78353 || ||| || || | || || ||||| || |||||||||||||| || |||||| Sbjct 233867 GCAGACTTGGAAATGACGGCACACTCCTTCAAGGTGTCGTAGATACCCTCGATGCTGTCA 233808 Query 78354 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAT 78413 | | ||||| || ||||| ||| |||| || | | ||| || || || || Sbjct 233807 TTCTTCATGCAAATCAGAAAGCAGGAGGACAGCTGCGGGCGGGGAGTGCCAGCGTTGAAG 233748 Query 78414 AATGTCGGAGATGCATGCGTAAACCA 78439 | || || ||||| || || ||||| Sbjct 233747 AGCGTGGGGGATGCGTGTGTGAACCA 233722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694644912076640