Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq152 114 3e-20 seq41 105 2e-17 >seq152 Length=376403 Score = 114 bits (126), Expect = 3e-20 Identities = 158/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| || || ||||| ||||||||||| || || || | || | |||||| Sbjct 329375 GAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATC 329434 Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || | ||||| || || |||||||| | ||||||||| | | ||| || ||||| Sbjct 329435 CTCCAACTGCTTT--CCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTA 329492 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTA 152066 |||||||| || |||||| | || | | |||| ||| ||| || ||||||||| Sbjct 329493 TCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGA---CTCAACCTCAAGAGTA 329549 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | |||||| || |||| ||||| Sbjct 329550 ATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 100 bits (110), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||| ||||| || |||||||||||||| || | || | ||||| || Sbjct 331446 ACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATCCTCC 331505 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| ||||| || ||||| | ||| ||||| | | ||| || ||||| |||||| Sbjct 331506 AGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGA 331565 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 || || || || | || | | ||| ||| | ||| ||||| | |||||||| | Sbjct 331566 ATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGA--CTCCACTTCCAACGTAATAGTCT 331623 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || | ||| || || || | ||||| Sbjct 331624 TACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 >seq41 Length=668564 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| ||||| ||||||||||| || |||||||| |||| || | ||||| Sbjct 25295 AGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCC 25236 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || || || | |||||||| | | || || ||||| | Sbjct 25235 TCAAGTTGCTTT--CCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGT 25178 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || || ||| | || | | |||||| ||| ||||| | ||| || | Sbjct 25177 CTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGG 25118 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || ||||| |||| |||||| Sbjct 25117 TCTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153780131061921