Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq152 111 1e-19 >seq152 Length=376403 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||||||||| |||||||| || || ||||| ||||| ||| ||||| Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || || ||| ||||| || ||| | || ||| ||| Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||||| ||| |||||||| |||| ||| || |||| ||||| || Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAAC 331475 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || ||| | || |||||| |||| ||||||| Sbjct 331474 ATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGGCA 331426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 111225 GCTT-ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATAC 111283 |||| |||| ||| ||||| |||||||||||| |||| |||| || || ||||| | Sbjct 329691 GCTTGATTTTTGCTGGCAAGCAATTGGAAGATGGCCGAACTCTGGCTGACTACAATATCC 329632 Query 111284 AAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||| ||||| || || ||||| || ||||||||||| ||||||| Sbjct 329631 AAAAGGAATCAACGCTCCATTTGGTTTTGCGTCTGCGTGGTGGCA 329587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421797057593176