Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 2e-13 >seq12 Length=902100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 176174 TATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGC 176233 ||||||||||||||| || || | ||| | ||||| || | ||| |||||||| Sbjct 543438 TATTCTGGATGCTGCGGAAGAGTCTGGACTGGAACTTCCCTTCAGTTGCAAGGCTGGTGC 543379 Query 176234 CTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTT 176293 || ||| ||||| || || ||||| | ||||| || || || | | ||||| || Sbjct 543378 TTGCTCGTCATGTGCTGGGAAGCTCATTGCAGGCACAGTGGACCAGACAGGGCAATCATT 543319 Query 176294 CCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAG 176353 |||||||| | ||||| || || ||||||||||||||||| || | || || || Sbjct 543318 TCTTGATGAGAAACAGATTGAGAATGGATTCATTCTGACTTGTGTCGCAAAACCAAC-AG 543260 Query 176354 C-GATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGATGGAAAC 176403 | || ||| ||| || || ||||| ||||||| ||||| || || Sbjct 543259 CTGACTGTACAATTCTCACGGAACAAGAATCTGAACTTT-TTGATTGACAC 543210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596286694486160