Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq41 154 1e-32 seq152 122 6e-23 >seq41 Length=668564 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| |||||||| |||||| |||||||| || || Sbjct 27374 CATCCCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTC 27315 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||||||||||||||||| |||||||| |||| Sbjct 27314 TGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGG 27255 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | | ||| | ||||||||| ||| | Sbjct 27254 CGGGATGCCCTCCTTGTCCTGGATCTT-TGCCTTGACGTTGTCGATGGTGTCGCTGGACT 27196 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||| || || ||||| || || |||||||| || ||||||||||| Sbjct 27195 CCACTTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 154 bits (170), Expect = 1e-32 Identities = 178/237 (75%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44105 TTCATT--CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 |||||| ||||| ||||| | ||||||||| ||||| || ||||| |||||||| | Sbjct 30032 TTCATTGACCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTAT 29973 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 | || || || ||| | || ||||||||||||||||||||||||| |||||||| | Sbjct 29972 AGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGT 29913 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGC 44280 ||| || | |||||||| ||| ||||| ||| || ||| | ||||||||| Sbjct 29912 CTGGCGGGATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGT--CGATGGTGTCGCT 29855 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||||| || || ||||| || || || ||||| || ||||| ||||| Sbjct 29854 GGACTCGACCTCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| ||||| || |||||| |||||||| || || Sbjct 28533 CATCCCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTC 28474 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||||||||||||| |||||||||| |||||||| |||| Sbjct 28473 TGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGG 28414 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | || ||| | ||||||||| || | Sbjct 28413 CGGGATGCCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCGATGGTGTCGCTCGACT 28355 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| ||||| ||||| || || |||||||| || ||||| ||||| Sbjct 28354 CGACCTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 95.1 bits (104), Expect = 9e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || |||||| || || || |||||| ||||||||||| || Sbjct 28305 CATACCACCTCGCAGGCGCAGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTC 28246 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || ||||||||||| |||||||| || | Sbjct 28245 TGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCGGG 28186 Query 44227 AGGCACACCT 44236 ||| | |||| Sbjct 28185 AGGAATACCT 28176 Score = 95.1 bits (104), Expect = 9e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| |||||||| |||||| ||||| || || || Sbjct 29800 CATCCCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATATTATAGTC 29741 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||||||||||||||||| |||||||| |||| Sbjct 29740 TGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGG 29681 Query 44227 AGGCACACCTTCCTTTT 44243 || | ||| | |||| Sbjct 29680 CGGGATGCCTGCATTTT 29664 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||| | || ||||| ||| || || |||||| ||||| ||||| Sbjct 27149 TTGCATCCCACCTCGCAGACGCAGCACCAAGTGGAGTGTCGACTCCTTCTGGATATTGTA 27090 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || ||| | || ||||||||||| || |||||||||| |||||||| || Sbjct 27089 GTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTC 27030 Query 44224 TGAAGGCACACCT 44236 | ||| | |||| Sbjct 27029 GGGAGGAATACCT 27017 >seq152 Length=376403 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| ||||| ||||| || |||||| |||||||||||||| Sbjct 331424 CATGCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATC 331483 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || |||||||| || |||||||| || | |||||| || || | Sbjct 331484 AGCCAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGG 331543 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| || ||||| ||||| | | ||||||||| ||| || Sbjct 331544 AGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTC 331603 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| |||||| ||||| || || | || || || || ||||||||| Sbjct 331604 CACTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| || || ||| ||||||||||||||| || || || || ||| | || || Sbjct 329378 CACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTC 329437 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||| | ||||||||| || | ||| | ||| ||||| || Sbjct 329438 CAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTG 329497 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 |||||| ||| || ||| | |||||||| || || ||||| | ||||| || Sbjct 329498 AATCTTCGCCTTGACATTGT--CAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTT 329555 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | ||||| || |||||||||||| Sbjct 329556 TTCCCTGTCAAAGTCTTGACAAAGATTTGCATG 329588 Score = 82.4 bits (90), Expect = 5e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||||||||| ||||| ||||||||| |||||||| || Sbjct 330893 CATGCCACCACGGAGACGCAACACCAGGTGGAGCGTTGACTCCTTTTGAATGTTGTAGTC 330952 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||| |||||| || ||||| |||| |||||||| || | Sbjct 330953 TGCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGG 331012 Query 44227 AGGCACACCT 44236 || | |||| Sbjct 331013 GGGGATACCT 331022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359978330309367