Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq41 154 4e-32 seq152 145 2e-29 >seq41 Length=668564 Score = 154 bits (170), Expect = 4e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || ||||| || || |||||||| ||||| || | ||| Sbjct 29801 CAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAGCGAC 29860 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||||||||||||| ||||| ||||| || |||||||| Sbjct 29861 ACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAGCAG 29920 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | || || || || |||||| || Sbjct 29921 CGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAACATC 29980 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || ||||| || || ||||| || ||| | || || Sbjct 29981 CAGAAGGAATCTACCCTTCATCTGGTGTTGCGCCTGAG 30018 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || ||||| || || |||||||| || ||||| | ||| Sbjct 27147 CAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGCGAC 27206 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||| |||||||| || || ||||| || |||||||| Sbjct 27207 ACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 27266 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | || || || || |||||| || Sbjct 27267 CGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAACATC 27326 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 27327 CAGAAGGAGTCGACGCTTCATCTGGT 27352 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || || || || || ||||| || || || ||||| ||||| || ||| Sbjct 28306 CAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC--- 28362 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| ||||| || |||||| |||||||| || || ||||| || |||||| Sbjct 28363 GACACCATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 28422 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || ||||| || ||||| | || || || || |||||| Sbjct 28423 CAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 28482 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| || Sbjct 28483 ATCCAGAAGGAGTCGACCCTTCATCTGGT 28511 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || ||||| | || || || ||||| Sbjct 25087 CAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCTTCAGAT 25146 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||| ||||| || || || ||||| ||||||||| Sbjct 25147 ACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAGCAA 25206 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || ||||| || || || |||||| | || || || ||||| || | Sbjct 25207 CGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTACAATATT 25266 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || || |||||| Sbjct 25267 CAAAAAGAGTCGACTCTGCAT 25287 >seq152 Length=376403 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | || || || || || || | || ||||| | ||| Sbjct 331651 CAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGCGAC 331592 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||| ||||| || || |||||||| ||||| || Sbjct 331591 ACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAACAG 331532 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || ||||| |||||||| || ||||| |||| || || ||||| ||| || Sbjct 331531 CGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAACATC 331472 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || ||||| |||||| Sbjct 331471 CAGAAGGAGTCGACTCTTCATCTGGTTTTG 331442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203688771860694