Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq41 165 8e-36 seq152 123 2e-23 >seq41 Length=668564 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||||||| || || ||||||||| ||||||||||| | Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || || || ||||||||||| ||||| | || Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | ||||| | |||| | | | |||||||||||||| || Sbjct 28409 ATGCCCTCCTTGTCC-TGGATCTTTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGAC 28351 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| ||||| || || |||||||| Sbjct 28350 CTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 161 bits (178), Expect = 9e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||||||| ||||| ||||||||| ||||||||||| | Sbjct 27370 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCC 27311 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| ||||| || ||||||||||| ||||| | || Sbjct 27310 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 27251 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | ||||| | ||| | | | |||||||| |||||||| Sbjct 27250 ATGCCCTCCTTGTCC-TGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCAC 27192 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| || || || ||||| Sbjct 27191 TTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 149 bits (164), Expect = 6e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || ||||||||||| || || |||||||| ||||||||||| | |||||||| Sbjct 30015 AGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGG 29956 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || ||||||||||| ||||| | || | || ||| Sbjct 29955 CCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCC 29896 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | ||||| | || | | | |||||||| ||||| ||||||| || Sbjct 29895 TTGTCC-TGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGT 29837 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||||||||| || || |||||||| Sbjct 29836 GATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||||||| ||||| ||||||||| || |||||||| | Sbjct 29796 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATATTATAGTCTGCC 29737 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| | || || |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct 29736 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29677 Query 41755 A 41755 | Sbjct 29676 A 29676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||||||| || || ||||||||| ||||| ||||| | Sbjct 28301 CCACCTCGCAGGCGCAGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCC 28242 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || |||| ||||| ||||| | ||| Sbjct 28241 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCGGGAGGA 28182 Query 41756 A 41756 | Sbjct 28181 A 28181 >seq152 Length=376403 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | ||| || |||||||| || || ||||||||| ||||| || || | Sbjct 331427 GCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 331486 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||| |||||||| || || || ||||||||||| | || Sbjct 331487 CAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGG 331546 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| | ||| | || || | ||| | | |||||||| ||||||| Sbjct 331547 GATGCCCTCCTTGT-CTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCA 331605 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| || || ||||| |||| || || || ||||| |||||| Sbjct 331606 CTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||||| ||| |||||| || ||||||||||| | Sbjct 329361 CCACCTCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCC 329420 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || || | |||||| || || || || || ||||| ||||| | || Sbjct 329421 AGGGTCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 329480 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| | | ||| | || || | || | | | ||||| || ||||| || Sbjct 329481 ATACCCTCCTTAT-CTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAAC 329539 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || ||||| || |||| ||||| || || || |||||| Sbjct 329540 CTCAAGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCATG 329588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| |||||||| || ||||| |||||| |||||||| ||||| | Sbjct 330896 GCCACCACGGAGACGCAACACCAGGTGGAGCGTTGACTCCTTTTGAATGTTGTAGTCTGC 330955 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | |||||| || || || ||||||||||| ||||| | ||| Sbjct 330956 AAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGGGGG 331015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| ||| | || ||||||||||||||| ||||||| Sbjct 332435 GCCACCACGAAGGCGCAGCACCAAATGTAAAGTTGACTCCTTCTGAATGTTGTAGTCGGC 332494 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| || | || || ||||| || || ||||| |||||||| |||||||||| || Sbjct 332495 CAAGGTCCGGCCATCTTCCAGCTGTTTACCAGCGAAAATCAGGCGTTGTTGGTCCGGTGG 332554 Query 41755 AA 41756 || Sbjct 332555 AA 332556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288102521200