Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq27 187 5e-42 seq449 102 2e-16 >seq27 Length=268247 Score = 187 bits (206), Expect = 5e-42 Identities = 455/677 (67%), Gaps = 13/677 (2%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| ||||| || || ||||| ||||| |||||||| | ||| | || || || | Sbjct 220200 GTCCTCACCAATCGCGTAGCGCCACTGGATGTACTGGTTCGCGGTCTTCTCCAGGTGCTG 220259 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||||||||||||||| || ||||| |||||||| || | ||||| || || |||||||| Sbjct 220260 CTCGATGTGGTGGAACGCGTGCTGCGCCACGTACGCGATACGCAGGTTGGGGTGCTTCCA 220319 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || | || | || ||||| | || || |||| ||| || | ||| || || Sbjct 220320 CACGGTGCCCTCGCAGGGCTCCATCTCGCCGGTCAGCAGCTTGATCATGGTCGACTTGCC 220379 Query 319176 CGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 319235 || ||||| |||||| ||| | | | |||| ||| | | | | ||||| Sbjct 220380 GGCGCCGTTGGCGCCCAGCACCGCCACACGGGAGGACAGGGTGATGTAGATGGACACGTC 220439 Query 319236 GTCAAAGATTAGTTTTTCCGTACCC--GGATACTTGAACCCCACACCGCGT-AGCTTCAT 319292 | | || | ||| ||| || || |||||||| || || | | | | ||| | Sbjct 220440 GG-ACAGCGT-GTTCTTCTCGGCCTTGGGGTACTTGAAGCCGAC-CTTCATCATCTTGAG 220496 Query 319293 GATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGT 319352 |||||| |||||| | ||| |||||| ||||| |||||||| |||||||| | | Sbjct 220497 GATGGCCTTGTCCTTGGTCTTGACACCCTCCAGGAAGCCGGGCTCAGGGAACTTGAAGGA 220556 Query 319353 GGTCTTCGTCTCGGTAAGGGCGTAGTAACT-CGCTGATTCGGGACGCTTCTTCACGAACT 319411 | | | | | || ||||||| ||| | ||||| || ||||||||||| Sbjct 220557 GATGGGGGAGGCCGACAGCTCGTAGTAGGAGCGC-GCCTCGGGCTTCTGCTTCACGAACT 220615 Query 319412 CGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGG 319471 ||||||| || || ||| |||| ||||| |||| ||||| || | || || Sbjct 220616 CGGACAGGTTGCCGCGGTAGATCTTGAGCTTGCGGTTC---TCGTAGTGCAGGATGTTGG 220672 Query 319472 TGCAAACAGC-GTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTA 319530 |||| ||| |||||| || || |||||||| ||||| || || | | |||| | Sbjct 220673 TGCAG-CAGAAGTCGAGAAAGCCAGAGTCGTGGGACACCATGACTGAGGTCACGTGGGTC 220731 Query 319531 AGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGC 319590 ||| || |||||| | || |||| |||||| || ||||||||||| ||| Sbjct 220732 AGGCCGACCAGGTAGTTCTGCAGCCACGCCACGTTGTGGACGTCCAGATGGTTGGTGGGC 220791 Query 319591 TCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATT 319650 || || || ||||| | | || ||| | ||||| ||||| || || || || ||||| Sbjct 220792 TCATCCAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGCGCCAGCGCCAGCTTCATC 220851 Query 319651 TTCCACCCTCCGGAAAG 319667 ||||| || |||||||| Sbjct 220852 TTCCAGCCGCCGGAAAG 220868 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 319805 CGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACC 319864 |||| ||||| | ||||| |||||||| | || |||| || || | ||||| | Sbjct 221275 CGGAGCCGTCAATGTCGTGCTCCACGTACACGGTCTTCAGCTCAGTCGGGGGAGGGAAGC 221334 Query 319865 CTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCC 319924 | || | ||||||||| | || ||||||||||| || || || || || ||||| || | Sbjct 221335 CCTCGACCTGGCCGTTGGCGATGGCGCGCATCAGCGTGGACTTGCCAGCGCCGTTGGGGC 221394 Query 319925 CACACAGACCGTAGCGGTTTCCGCG 319949 | ||||||||||| || || || || Sbjct 221395 CGCACAGACCGTAACGCTTGCCACG 221419 >seq449 Length=50303 Score = 102 bits (112), Expect = 2e-16 Identities = 210/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 281769 TCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTA 281828 || || ||||||||||||| || ||||||||||| |||| || | ||| ||||| Sbjct 36769 TCCTTGCCACCCTGCAGCCGCGTGCCAAACTGACCTGAGGGCACCAGCAGGTTGATGTTG 36710 Query 281829 TTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCG 281888 ||| || || | ||||| |||||||||| ||| || | || || |||| ||| Sbjct 36709 TTGGAGCCCACAAAGTCCTGTGCCAGGTTGATGATGGTGGCGGACAGGGACGCCTCGCCG 36650 Query 281889 TGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGAT 281948 ||||| || || ||| |||| |||||||| | ||| | ||||| | ||| || Sbjct 36649 TGGTGGTACGCCGAGTGCTCGGACACATAACCTGCCAGCTGCACCACCTTGATGTCCGAC 36590 Query 281949 GTCAAGTTGCGTTTGAAAGCGCAATATAAT---ACTTTTCGTTGAGAAGGCTTGAAACCA 282005 | | |||||| ||||| ||| | ||| | || || || |||||| | ||| Sbjct 36589 TTGAGGTTGCGCTTGAA---GCATGAGAATAGGATCTTGCGCTGGCCAGGCTTCAGACCG 36533 Query 282006 TCAACGACAGACGGAATGCTGCGTTCCAGGTCATACCGCGAGAACAAAATAAGTTCCTTG 282065 || || | || ||| || ||||||||| |||||||| | || || |||||| Sbjct 36532 TCCACCATGCTGGGGATGGATCGCTCCAGGTCAGCGCGCGAGAAGAGGATGAGCTCCTTG 36473 Query 282066 TCAATGAAGTC 282076 | ||||| || Sbjct 36472 TTGATGAACTC 36462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057789669313790