Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq503 105 6e-18 seq2326 102 7e-17 seq533 102 7e-17 seq493 102 7e-17 seq2016 100 2e-16 seq67 98.7 8e-16 >seq503 Length=44646 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 44635 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 44576 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 44575 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 44516 Query 21069 ACGCCT 21074 | |||| Sbjct 44515 ATGCCT 44510 >seq2326 Length=1360 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 646 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 705 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | ||||||||| ||| Sbjct 706 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 765 Query 21069 ACGCCT 21074 | |||| Sbjct 766 ATGCCT 771 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 1015 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 1074 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | ||||||||| ||| Sbjct 1075 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 1134 Query 21069 ACGCCT 21074 | |||| Sbjct 1135 ATGCCT 1140 >seq533 Length=40786 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 40475 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 40534 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | ||||||||| ||| Sbjct 40535 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 40594 Query 21069 ACGCCT 21074 | |||| Sbjct 40595 ATGCCT 40600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||||| || ||||| ||||| |||||||| || ||||| Sbjct 40113 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 40172 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 |||||||| ||||| || | || || | ||||||||| ||| | |||| Sbjct 40173 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 40223 >seq493 Length=45929 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 45699 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 45640 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | ||||||||| ||| Sbjct 45639 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 45580 Query 21069 ACGCCT 21074 | |||| Sbjct 45579 ATGCCT 45574 >seq2016 Length=2168 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 1440 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1499 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || ||||||||||||| ||||| || | || || | ||||||||| Sbjct 1500 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1552 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 1821 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1880 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || ||||||||||||| ||||| || | || || | ||||||||| Sbjct 1881 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1933 >seq67 Length=188910 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 ||||| | ||||| | |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 176519 CGCAGGCGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 176578 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 || ||||||||||||| ||||| ||| | || |||| ||||||||| Sbjct 176579 CGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTC 176625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422246164462628