Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq28 159 4e-34 seq2326 123 3e-23 seq533 123 3e-23 seq67 122 9e-23 seq493 120 3e-22 seq2016 114 1e-20 seq503 114 1e-20 seq7 98.7 1e-15 seq99 95.1 1e-14 seq471 91.5 2e-13 >seq28 Length=264079 Score = 159 bits (176), Expect = 4e-34 Identities = 135/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 |||||||| |||||||| || || || |||||| |||||||||| ||| ||| | || Sbjct 66580 GAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTTCTGCTCC 66521 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| || |||||||||||||||||||| || ||||||||||||| Sbjct 66520 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATC 66461 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||| | |||||||| ||||| ||||||||| || |||||| || Sbjct 66460 TCCCGTGACGAGGGCCTGCACACCGACTTTGCATGCCTGCTGTACA 66415 >seq2326 Length=1360 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 770 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 711 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||||||||| || ||| | ||| || | Sbjct 710 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 651 Query 40912 GGCGGC 40917 || ||| Sbjct 650 GGTGGC 645 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 1139 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1080 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||||||| || ||| | ||| || | Sbjct 1079 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1020 Query 40912 GGCGGC 40917 || ||| Sbjct 1019 GGTGGC 1014 >seq533 Length=40786 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 40599 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 40540 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||||||||| || ||| | ||| || | Sbjct 40539 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 40480 Query 40912 GGCGGC 40917 || ||| Sbjct 40479 GGTGGC 40474 Score = 122 bits (134), Expect = 9e-23 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 40222 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 40163 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||||||| || ||| | |||||| | Sbjct 40162 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTTCGCTTGCGC 40103 Query 40912 GGCGG 40916 || || Sbjct 40102 GGTGG 40098 >seq67 Length=188910 Score = 122 bits (134), Expect = 9e-23 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| |||||||||| || ||||| |||||||| |||| ||| Sbjct 176637 GGCATCCCGCCTGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 176578 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||| ||||| || ||| ||||| || || Sbjct 176577 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACACTGCACCTCGTGCTGCGCCTGCGG 176518 >seq493 Length=45929 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 45575 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 45634 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||||||||| || ||| | ||| || | Sbjct 45635 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 45694 Query 40912 GGCGGC 40917 || ||| Sbjct 45695 GGTGGC 45700 >seq2016 Length=2168 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || || ||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 1945 GGTATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1886 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||||||||| || ||| | ||| || | Sbjct 1885 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1826 Query 40912 GGCGGC 40917 || ||| Sbjct 1825 GGTGGC 1820 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || || ||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 1564 GGTATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1505 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||||||||| || ||| | ||| || | Sbjct 1504 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1445 Query 40912 GGCGG 40916 || || Sbjct 1444 GGTGG 1440 >seq503 Length=44646 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 44511 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 44570 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||||||| || ||| | ||| || | Sbjct 44571 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 44630 Query 40912 GGCGGC 40917 || ||| Sbjct 44631 GGTGGC 44636 >seq7 Length=421595 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 |||||| |||| || || || ||| |||||| || |||||| ||| ||| ||| Sbjct 151501 GAGCGCTTGGTCGCGTTTGCCTGCGTGGAGGGCATCCACTTTTCTGGCTCCTTCTGTGCC 151442 Query 117095 ATATTTTGGCTCAAGAAACGCGGC--CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCA 117152 || || |||||||| || ||||| |||||||||||||| | ||| |||| |||| Sbjct 151441 ATCTTCTGGCTCAAAAA--GCGGCTGCTCATGCCCGGCCTCTCCTTCTCAAACGTCCTCA 151384 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA 117204 |||| | ||||| || ||||| ||||||||| || ||||| |||||| Sbjct 151383 TCTCTCGTGACGAAGGCCTGCACACCGACTTTGCGTGCACGCTGTACAAGCA 151332 >seq99 Length=163232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 117091 CGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCT 117150 |||||| | ||||| ||||| || ||||||||||||||||| || ||| ||| ||||| Sbjct 95225 CGCCATTTACTGGCTGAAGAAGCGAGGCCTCATGCCCGGCCTCACCTTCTCCAATGAGCT 95284 Query 117151 CATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||||| | || ||||| ||||| ||||||||| || |||||| || Sbjct 95285 CATCTCACGTGATGAGGGCCTGCACACCGACTTTGCGTGCCTGCTGTACA 95334 >seq471 Length=47721 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 3128 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 3069 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||||||||||||||||| Sbjct 3068 ACCCTGGCGGACTACAACATCCAGAAGG 3041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202886872080