Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq67 89.7 6e-13 seq1031 82.4 9e-11 seq80 82.4 9e-11 >seq67 Length=188910 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| |||| |||||| || || ||||| || ||||| || || || Sbjct 176525 CGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 176584 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || |||||||| ||||| || ||||||||||||||||| | ||| Sbjct 176585 TCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGCGG 176631 >seq1031 Length=11930 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| Sbjct 277 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAATCACCACTATACTA 223 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| Sbjct 11653 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAATCACCACTATACTA 11707 >seq80 Length=178980 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| Sbjct 122852 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAATCACCACTATACTA 122798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571799494825240