Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2326 91.5 1e-13 seq2016 91.5 1e-13 seq533 91.5 1e-13 seq493 91.5 1e-13 seq67 86.0 4e-12 seq503 82.4 5e-11 >seq2326 Length=1360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||||| | Sbjct 646 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 705 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 706 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 758 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||| | | Sbjct 1015 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 1074 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 1075 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1127 >seq2016 Length=2168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||||| | Sbjct 1440 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1499 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 1500 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||||| | Sbjct 1821 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1880 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 1881 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1933 >seq533 Length=40786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||||| | Sbjct 40475 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 40534 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 40535 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40587 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| | ||||||||||| | || || ||||| ||||||||||| | | Sbjct 40098 CCACCGCGCAAGCGAAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 40157 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 40158 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40210 >seq493 Length=45929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||||| | Sbjct 45699 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 45640 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 45639 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 45587 >seq67 Length=188910 Score = 86.0 bits (94), Expect = 4e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228 ||||| | |||||| ||||| | || || ||||| ||||||||||||| ||| Sbjct 176519 CGCAGGCGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 176578 Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| |||| |||| ||||||||| || || ||||| ||||||||||| Sbjct 176579 CGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTC 176625 >seq503 Length=44646 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||| | | Sbjct 44635 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 44576 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| || || || || ||||||||||| Sbjct 44575 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 44523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062026464480