Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7 145 2e-29 seq28 86.0 1e-11 >seq7 Length=421595 Score = 145 bits (160), Expect = 2e-29 Identities = 238/342 (70%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 248839 ACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCAC 248898 ||||||||| || || ||||| || | |||||| || | || || |||||| Sbjct 312099 ACGCTGGAGCGCTCCTACCTCCTGCGCATCAACGGCAAGGTCATTGAGCGCCCCCAGCAC 312158 Query 248899 ATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACG 248958 ||| ||||||| ||||| || || || |||||||||||||| || || || | ||| Sbjct 312159 ATGCTGATGCGCGTGGCCGTGGGCATCCACAAGGATGACATCGATGCCGCCATCAACACG 312218 Query 248959 TACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 ||| | ||| ||| |||||| | || || ||| | || || ||||||||| |||| Sbjct 312219 TACCACCTCATGTCTGAGCGCTGGTTCACGCACGCCTCCCCCACCCTCTTCAACTCCGGC 312278 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCT---TGCCATGCAAGACGACTCTGTC 249075 ||| | | |||||| ||| ||||| || | ||||| | |||| || || Sbjct 312279 ACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTGGTGTGTGCCA---AGAACGATTCCATC 312335 Query 249076 GACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 |||||||| ||||||||||| || || || ||| || || | || ||||| ||| Sbjct 312336 GACGGCATCTATGACACGCTCAAGGAGTGTGCTGTGATCTCCAAGTCGGCCGGCGGCATC 312395 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATC 249177 || |||||| || |||||| || || | || ||||||||| Sbjct 312396 GGCCTCTCCATCCACAACATACGTGCCACCGGCTCGTACATC 312437 >seq28 Length=264079 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| |||| | |||||||| ||||||||||| ||||| || || || || ||||| Sbjct 65750 GTACTCCCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGATCTCCAT 65809 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAG 157362 ||| || || |||||||| |||||| |||||||| ||||| Sbjct 65810 CCAGTCAAAGGGGTTGGCTGTGTTGTAGTGCTTGTCGTTGCCCAG 65854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073731551918144