Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 199 4e-46 seq28 105 6e-18 >seq7 Length=421595 Score = 199 bits (220), Expect = 4e-46 Identities = 499/744 (67%), Gaps = 28/744 (4%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||| ||||| || ||| |||||||||||||||| |||| ||| Sbjct 314607 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGAC 314548 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCC---ATGTACACATTGAACGACTGACTCTGATCG 22261 || | || || | | || |||| ||| |||| ||||||||||| ||||| ||| Sbjct 314547 GTGAGCTTGCCGAAGTTGGG---GTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCG 314491 Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321 || || || || ||||| |||||||| | | || |||| | || ||||| || Sbjct 314490 ATGAAGGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCACACC 314431 Query 22322 GTCTTGTACAGTTGCCTGATCTC-TAACGG-TATCGATTCGATCCTCTGGACGGACCCGT 22379 ||||||||||| | | ||| | | || | || | || | |||||| ||||||| Sbjct 314430 GTCTTGTACAGGGAGCGCAGCTCATCAGGGATGTCCA---GAGC--CTGGACTGACCCGT 314376 Query 22380 TATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGT-CAAATCT 22438 | | | | || || ||| | |||||||| || || ||||| || || Sbjct 314375 TGGCCGCCACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCAT-GCGGTACAGGTCG 314317 Query 22439 TTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATG 22498 | | ||| || ||||||| || |||||||| |||| |||||||| ||| ||| Sbjct 314316 TGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATG 314257 Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558 ||||| ||| | || || || | || ||||| ||||| ||||| | ||| || ||||| Sbjct 314256 TTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTG 314197 Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTACTCTTGAG 22617 ||||| ||||||| ||| |||||||| | || ||||| | ||| | | | | || Sbjct 314196 GGCATGGGCGCCAGCAGCAGCGAGTTGCGCACGCCGTTGGCGGCAATGTCTGCGC-GCAG 314138 Query 22618 CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACAC 22677 | ||||||||| | || || | ||| || ||||||| || | |||| ||| Sbjct 314137 GCCAGCCCAGTCCCAGCGGTCCGAGCCCTTCA---TGCCCCACATGTCATGCTGCAGCAC 314081 Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTC 22737 ||| || | | ||| ||| ||| || || || || || | || ||| || || Sbjct 314080 GCCCTGAGACACAGGGGAGCCAGGGTATGTCTCATAGGGGCCCTCCTTCTTGGCCAGCTC 314021 Query 22738 GCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA-ATTCGG 22796 | || || || || |||| || || ||| ||||| | |||||||| | | | Sbjct 314020 CATGGACGTCTTCAGGGCCGCGTAGTAGATGCACTCAAAGATGTCCTTGTTCAGCTGCTG 313961 Query 22797 CGGC---GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || | ||||| || | ||||| | || || || ||||||||| |||| |||| Sbjct 313960 CGCCTCAGGCGA----GTCAAAGGGCATGCCCAGCAGCAGGAACGCGTCAGCCAGGCCCT 313905 Query 22854 GAACGCCTATACCGATCGGTCGGT 22877 | || || ||||| || || |||| Sbjct 313904 GGACCCCGATACCAATGGGGCGGT 313881 Score = 118 bits (130), Expect = 9e-22 Identities = 245/365 (67%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 23513 ACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG 23572 || || ||||| |||| ||| | || | ||||| ||||| | ||||||||| | ||| Sbjct 312508 ACATACCGGGCAGTGTCATTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCG 312449 Query 23573 CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCT 23632 ||| | ||| || | || || | |||||| | | || || ||||| Sbjct 312448 TTGGTGCCGCGGATGTACGAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCG 312389 Query 23633 CCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTG 23692 ||| |||| || || |||| || || | || || ||||| |||||||| |||||| Sbjct 312388 CCGGCCGACTTGGAGATCACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAA 312329 Query 23693 TCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAG 23752 || | |||| |||| ||| || || |||| || | ||| || ||| | Sbjct 312328 TCGTTCTTGGCACACACCAGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTG 312269 Query 23753 AACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATG 23812 || || || ||| ||||||||| || | | | ||||| || | |||||||| |||| Sbjct 312268 AAGAGGGTGGGGGAGGCGTGCGTGAACCAGCGCTCAGACATGAGGTGGTACGTGTTGATG 312209 Query 23813 GCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGT 23872 |||||||| ||||| || ||| || || | ||| |||||||||| ||||| || || Sbjct 312208 GCGGCATCGATGTCATCCTTGTGGATGCCCACGGCCACGCGCATCAGCATGTGCTGGGGG 312149 Query 23873 CTCTC 23877 | ||| Sbjct 312148 CGCTC 312144 Score = 116 bits (128), Expect = 3e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || || ||||| || || |||||| | | ||||||||| || || || Sbjct 313454 GCGATGGACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCGTGTACTCCACGATCTCA 313395 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||| ||||| || || |||| || |||||| || || |||||| Sbjct 313394 GTGCACAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCAC 313335 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 || |||||||| ||||||||||| |||||||||||| ||||| ||||| ||| || | Sbjct 313334 GAGTCCTTGTACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGATGGCGAAC 313275 Query 23201 CACA 23204 |||| Sbjct 313274 CACA 313271 >seq28 Length=264079 Score = 105 bits (116), Expect = 6e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 || || ||| | ||| | || || || || || || || || |||||||| ||| ||| Sbjct 66586 TTTGCTGAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTTC 66527 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| || | || ||| | ||||| || ||||| |||||||||||||| ||| |||||| Sbjct 66526 TGCTCCA-TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGA 66468 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 | | || || || |||||||| || || || || ||||| ||||| ||||| Sbjct 66467 GCTCATCTCCCGTGACGAGGGCCTGCACACCGACTTTGCATGCCTGCTGTAC 66416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752285921360