Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq28 109 8e-19 seq7 109 8e-19 >seq28 Length=264079 Score = 109 bits (120), Expect = 8e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTT 125485 || ||||| || || || || ||||||||||||||||| || | || ||| ||||||| Sbjct 66574 CTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTTCTGCT-CCATCTT 66516 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 |||||||||||||| || ||||||||||| ||||| |||||| | || || || Sbjct 66515 CTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCCCG 66456 Query 125546 AGACGAGGGCCTACACTGTGACTTTGC 125572 ||||||||||| ||| |||||||| Sbjct 66455 TGACGAGGGCCTGCACACCGACTTTGC 66429 >seq7 Length=421595 Score = 109 bits (120), Expect = 8e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 98015 CATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCG-ACCAAGACGC 98073 |||||| || ||| ||||| | |||||||| || |||||||| | | | | || Sbjct 314398 CATCCCTGATGAGCTGCGCTCCCTGTACAAGACGGTGTGGGAGATCAAGCAGCGTGT-GC 314456 Query 98074 TGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGT 98133 || | || ||||| || || | || | || ||| |||||||| || |||||||| ||| Sbjct 314457 TGGTGGACATGGCCGCGGATCGTGGGGCCTTCATCGACCAGAGCCAGTCGTTCAACGTGT 314516 Query 98134 ACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGG 98193 | | | || |||| || | | | || || ||||||||||||| ||||| |||| Sbjct 314517 TCATGCCGGACCCCAACTTCGGCAAGCTCACGTCCCTACACTTTTACGCGTGGAAGAAGG 314576 Query 98194 GCCTCAAGACGGGCATGTACTATCTGAGAACA 98225 |||||||||| ||||||||||| ||| | ||| Sbjct 314577 GCCTCAAGACCGGCATGTACTACCTGCGCACA 314608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035736213080