Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq244 145 1e-30 seq334 143 4e-30 seq74 143 4e-30 seq42 143 4e-30 seq386 140 5e-29 seq12 140 5e-29 seq471 131 3e-26 seq430 131 3e-26 seq5 131 3e-26 seq163 120 5e-23 >seq244 Length=94851 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| |||||| Sbjct 26319 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 26260 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 26259 CGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 26200 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 26199 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 26140 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || ||| | |||| | ||||| || | || || || ||| Sbjct 26139 CACGCTCGTCGCAAGACCGTGACCGCGCTGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 26080 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 26079 CGCACCCTGTACGGCTTTGG 26060 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| |||||| Sbjct 163 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 222 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 223 CGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 282 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 283 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 342 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || ||| | |||| | ||||| || | || || || ||| Sbjct 343 CACGCTCGCCGCAAGACCGTGACCGCGCTGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 402 Query 16673 CG 16674 || Sbjct 403 CG 404 >seq334 Length=69447 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| |||||| Sbjct 163 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 222 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 223 CGCCGTCTGGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 282 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 283 CGTGGCGTGCTTAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 342 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || ||| | |||| | ||||| || | || || || ||| Sbjct 343 CACGCTCGCCGCAAGACCGTGACCGCGCTGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 402 Query 16673 CG 16674 || Sbjct 403 CG 404 >seq74 Length=182840 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| |||||| Sbjct 46057 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 45998 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 45997 CGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 45938 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 45937 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 45878 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || ||| | |||| | ||||| || | || || || ||| Sbjct 45877 CACGCTCGCCGCAAGACCGTGACCGCGCTGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 45818 Query 16673 CG 16674 || Sbjct 45817 CG 45816 >seq42 Length=233901 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| |||||| Sbjct 123211 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 123152 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 123151 CGCCGCCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACC 123092 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 123091 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 123032 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || ||| | |||| | ||||| || | || || || ||| Sbjct 123031 CACGCTCGCCGCAAGACCGTGACCGCGCTGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 122972 Query 16673 CG 16674 || Sbjct 122971 CG 122970 >seq386 Length=58972 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| |||||| Sbjct 16755 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 16814 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| |||||||| || |||||| |||| || | |||| || |||| | Sbjct 16815 CGTCGTCTGGCTCGCCGTGGTGGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACT 16874 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | ||||| ||| ||| |||| ||| || | ||| |||||| Sbjct 16875 CGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCGTGACCTACACCGAG 16934 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| ||| ||||| || ||| | |||| | ||||| || | || || || || Sbjct 16935 CATGCTCGACGCAAGACCGTGACCGCTCTGGACGTGGTCTACGCGCTCAAGCGCCAGGGA 16994 Query 16673 CG 16674 || Sbjct 16995 CG 16996 >seq12 Length=343484 Score = 140 bits (154), Expect = 5e-29 Identities = 191/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || || |||||||| |||||| Sbjct 327329 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCTATC 327388 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 327389 CGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 327448 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || | ||| |||||| Sbjct 327449 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTGACCTACACCGAG 327508 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || || |||| | ||||| || | || || || ||| Sbjct 327509 CACGCTCGCCGCAAGACCGTGACTGCCTTGGACGTGGTCTACGCCCTTAAGCGCCAGGGC 327568 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| || || ||||| Sbjct 327569 CGCACCCTGTATGGCTTCGGCGGTTAA 327595 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || || |||||||| |||||| Sbjct 341252 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCTATC 341193 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 341192 CGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 341133 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || | || |||||| Sbjct 341132 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTGACTTACACCGAG 341073 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || || |||| | ||||| || | || || || ||| Sbjct 341072 CACGCTCGCCGCAAGACCGTGACTGCCCTGGACGTGGTCTACGCCCTCAAGCGCCAGGGC 341013 Query 16673 CG 16674 || Sbjct 341012 CG 341011 >seq471 Length=47721 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || ||||| || || ||||||||||| || ||| Sbjct 46177 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATTCAGGGCATCACCAAGCCCGCCATC 46236 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| || ||||| |||| || | |||| || |||| Sbjct 46237 CGCCGTCTGGCTCGCCGTGGTGGCGTGAAGCGCATCTCAGGCCTCATCTACGAGGAGACC 46296 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| ||||| | ||| |||||| Sbjct 46297 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGATGCCGTGACCTACACCGAG 46356 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || ||| | |||| ||||||| || | || || || ||| Sbjct 46357 CACGCTCGCCGCAAGACCGTGACCGCACTGGACGTCGTCTACGCTCTTAAGCGCCAGGGC 46416 Query 16673 CG 16674 || Sbjct 46417 CG 46418 >seq430 Length=52317 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || || |||||||| |||||| Sbjct 49608 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCTATC 49549 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 49548 CGCCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACC 49489 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| |||| || || | || |||||| Sbjct 49488 CGTGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACGCCGTGACTTACACCGAG 49429 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || || |||| | ||||| || | || || || ||| Sbjct 49428 CACGCTCGCCGCAAGACCGTGACTGCCCTGGACGTGGTCTACGCCCTCAAGCGCCAGGGC 49369 Query 16673 CG 16674 || Sbjct 49368 CG 49367 >seq5 Length=483015 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || || ||||| || ||||||||||| |||||| Sbjct 302942 GCCAAGCGCCACCGCAAGGTGCTCCGTGACAATATCCAGGGTATCACCAAGCCCGCTATC 303001 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| || ||||| ||||||| || |||| || |||| Sbjct 303002 CGCCGTCTGGCTCGCCGTGGTGGTGTGAAGCGCATCTCTGGTCTGATCTACGAGGAGACC 303061 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| ||| ||| || | || || | ||| |||||| Sbjct 303062 CGTGGCGTACTCAAGGTGTTCCTGGAGAACGTCATTCGCGACGCCGTGACCTACACCGAG 303121 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || ||||| || || | |||| | || || ||| |||| || || ||| Sbjct 303122 CATGCTCGCCGCAAGACCGTGACTGCACTGGACGTGGTGTACGCACTGAAGCGCCAGGGC 303181 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || |||||||| Sbjct 303182 CGCACTCTCTACGGTTTTGG 303201 >seq163 Length=128150 Score = 120 bits (132), Expect = 5e-23 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16464 ACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523 || |||| || |||||||||||||| ||||| |||||||| || |||||||| || |||| Sbjct 100287 ACTTCCAGGGCATCACCAAGCCAGCAATCCGCCGTCTGGCCCGCCGTGGTGGCGTGAAGC 100346 Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583 | ||||||| | |||| || |||| |||| || | ||| | ||||| ||| || Sbjct 100347 GCATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTATTCCTGGAGAACG 100406 Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643 | |||| ||||| | |||||| ||||||||| || ||||| || || | | | Sbjct 100407 TCATCCGCGATGCCGTGACCTATACTGAGCACGCTCGCCGCAAGACCGTGACTGCGCTAG 100466 Query 16644 ATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | | ||||| || |||| || || ||||| | | ||||| || || Sbjct 100467 ACGTTGTCTACGCCCTGAAGCGGCAGGGCCGCACCCTGTATGGCTTCGG 100515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072884060369