Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1134 585 3e-162 seq1186 340 2e-88 seq681 107 2e-18 seq893 84.2 3e-11 >seq1134 Length=9887 Score = 585 bits (648), Expect = 3e-162 Identities = 745/1023 (73%), Gaps = 2/1023 (0%) Strand=Plus/Minus Query 137862 TGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCT 137921 |||||||||| | ||||||||| | | ||| || || ||||| || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 137922 GGACTACTACTTTTTCCCAC-TGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAAC 137980 || || || || |||||| |||||| || || | ||||| ||| | ||||| ||||| Sbjct 7876 GGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 137981 GTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTT 138040 |||||||| |||||||| || || || || || ||| | ||||| ||| || Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 138041 CCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 138100 | | |||||||||||||| ||||||||| | |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 138101 GGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTT 138160 ||||||||| | ||||| ||| | || ||||||||||| || || | ||| |||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 138161 TGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTC 138220 || || | ||||| || ||| || | || || |||||| | || || ||||| || | Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 138221 TCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTT 138280 ||| ||| | | ||||| |||||||||||||| ||||| | || || |||| || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 138281 CGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTT 138340 ||| || ||| | || || ||||| |||||||| |||||||||| || || || Sbjct 7517 CGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTT 7458 Query 138341 TGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCT 138400 |||||| |||||||||||||| || | | ||| | ||||||||||| |||||||| || Sbjct 7457 TGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCT 7398 Query 138401 CAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTAT 138460 ||||| || || |||||||| || || ||| || | |||| |||| | | ||||| || Sbjct 7397 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAAT 7338 Query 138461 TCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAA 138520 ||| ||||| || |||||||| || || | |||||||| || | || ||||| Sbjct 7337 TCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCG 7278 Query 138521 AGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTG 138580 || || | || || |||| |||||||| || |||||||| ||||||||| | | ||| Sbjct 7277 TGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTG 7218 Query 138581 GTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTT 138640 ||| || || || || | |||||| ||| || || ||| | |||||||| ||||| || Sbjct 7217 GTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATT 7158 Query 138641 TGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCT 138700 || || || | ||||| |||| ||| ||||| | ||||| | ||| | ||||| Sbjct 7157 CGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCT 7098 Query 138701 ACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGAC 138760 | |||| |||||||| || || || ||||| || || || ||||||||||| || || || Sbjct 7097 AAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAAC 7038 Query 138761 CTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGA 138820 ||||| || || || || | | ||||||||| | ||||| ||||||||| || || Sbjct 7037 ATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGA 6978 Query 138821 TCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTG 138880 ||||| |||||| || || || |||||||||||||| || | || |||||||| | Sbjct 6977 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTTA 6918 Query 138881 ATA 138883 ||| Sbjct 6917 ATA 6915 >seq1186 Length=9024 Score = 340 bits (376), Expect = 2e-88 Identities = 329/423 (78%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 135905 ATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCT 135964 ||||| || ||||||||||| || |||||||| || || |||||||| | ||||| ||| Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 135965 ATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAG 136024 ||||| || || | || || ||| | | | ||||| || ||||| ||||| Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 136025 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGT 136084 ||| ||||||||||||||||||||||||||| ||||||||||| || ||||| || ||| Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 136085 TACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTT 136144 ||||| |||||| | ||||||||||| || || ||||||||||||||||| ||||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 136145 TTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATG 136204 ||| | ||||||||||| ||||| |||| |||||| | || | || |||| || ||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 136205 GCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTA 136264 || |||||| | || || ||||||||||||||||| ||||| ||| ||||||||||| Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 136265 CTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAG 136324 | ||||| ||||| || | | || |||||| | ||||||||||| ||||| || Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATGAA 5479 Query 136325 CGT 136327 ||| Sbjct 5478 CGT 5476 Score = 250 bits (276), Expect = 3e-61 Identities = 273/360 (76%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||||||||| | || || || ||||| | || | |||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||||||| | ||||| || |||| || || | || ||||||||||| || Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || || || || || ||||| || || ||| ||||||| || | ||||| || || Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 ||||||| ||||||||||||||||| | ||||| ||||| | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 |||||||| ||||||||||| |||||| |||| || ||||||||||| ||| || | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||||||| | | ||| ||| || ||||||||| || ||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 135740 ATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTC 135799 ||||| || ||||| ||| |||||||| || || || || ||||| |||||||| ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 135800 CTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCC 135843 | ||||||| | || |||||||||||| ||| |||||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 107 bits (118), Expect = 2e-18 Identities = 123/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 135914 TTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGA 135973 ||||||||||| || |||||||| || ||||||||||| | |||||||| |||| || Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 135974 TCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGT 136033 || | || || ||| | | | ||||| || ||||| ||||| ||| |||| Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 136034 TACAAGTTCGGTCAAGAAGA----AGAGACTTACAACATTGTTGC 136074 ||||||||||||||||| || ||| ||||||||||| || || Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 >seq893 Length=16748 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 119469 GTCGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCGTGGGTTCGAATCCT 119524 |||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||| Sbjct 3088 GTCGCCAAGTGGTAAGGCTGCGGTTTTTGGTACCGCCATTCGTAGGTTCGAATCCT 3033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627948116963200