Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1186 260 4e-65 seq681 91.5 4e-14 >seq1186 Length=9024 Score = 260 bits (288), Expect = 4e-65 Identities = 342/471 (73%), Gaps = 2/471 (0%) Strand=Plus/Minus Query 19812 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTT 19871 |||||| | ||||| || ||||||||| | ||||||||||| ||||| ||||| || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 19872 TTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGAT 19931 ||||| ||||||||||| || || ||||| || | ||| ||||||||||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 19932 GTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCT 19991 | ||| ||| ||| || |||||||| ||||| ||||| || || || || || ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 19992 GCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCT 20051 |||||||| |||||||| | || || || ||||| ||||| ||||| || |||||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 20052 TTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATC 20111 ||||| ||||| | ||| ||| || || || | || ||| |||| | | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 20112 TGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAA 20170 | ||||||||||||||| | || || || ||||| ||||||||||| || || | |||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 20171 CGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGT 20230 || || | || |||||||| | | || | |||||| | || | || || Sbjct 5547 -GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGT 5489 Query 20231 TATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||| || || || ||||| |||||||| || || |||||||| | ||| Sbjct 5488 AATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 165 bits (182), Expect = 2e-36 Identities = 258/367 (70%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || || |||||| |||| ||| |||||||| | || | |||||||| || || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| | || | |||||| || || || |||| || ||||| || || Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCT 8703 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 ||||| || || ||||| || |||||||||||||| || || ||| | ||||| ||||| Sbjct 8702 CCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAAC 8643 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || || |||| || || | || | || || || || || | ||||| || || || Sbjct 8642 ATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATT 8583 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | || ||||||||||||||||| ||||| || ||| | | || Sbjct 8582 TGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 8523 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGC--ATACGCTGGTAGACAGTGGGAACTATCTTACA 19647 | ||||||||| ||| ||| | || ||| || | |||||||| |||||| | Sbjct 8522 TGCCACTTCTTCTTAG--GTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 19648 GATTAGG 19654 | ||||| Sbjct 8464 GTTTAGG 8458 >seq681 Length=27805 Score = 91.5 bits (100), Expect = 4e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 ||||||||||| | ||||||||||| || |||||||| || | |||||||| |||||| Sbjct 3255 CGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACG 3196 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | || || ||||| || | ||| ||||||||||| | | ||| ||| || Sbjct 3195 GTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTG 3136 Query 19948 GCTATAAGTTCGGGCAAGATGAA 19970 | || |||||||| ||||| ||| Sbjct 3135 GTTACAAGTTCGGTCAAGAGGAA 3113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144437255286948