Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1134 513 2e-140 seq1186 306 4e-78 >seq1134 Length=9887 Score = 513 bits (568), Expect = 2e-140 Identities = 733/1031 (71%), Gaps = 31/1031 (3%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| |||||| ||| |||||||||||| | || ||||| ||| | ||| | || Sbjct 7921 GATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTATTATTC 7862 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 || ||||||||| | ||| | || |||||||| || || || || || || |||||| Sbjct 7861 CCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATGG 7802 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 |||||||||||| | ||| | || || | || || ||||| ||||| ||||| || Sbjct 7801 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTT 7742 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 ||||| |||| | | |||||| || || | || ||||||| ||||| || ||| Sbjct 7741 TCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCAA 7682 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 || ||| | ||| ||||| ||| ||||||| ||||| || ||||| ||||| || Sbjct 7681 GGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGGT 7622 Query 172107 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 172166 | ||||| | || ||||||||| | | || ||||| ||||| | ||| || Sbjct 7621 GCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGCGCGTTCTGTAAACTTA 7562 Query 172167 CGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCT---TT 172223 ||||||||||||||| | || ||||||||| ||| | |||||| | |||| || Sbjct 7561 CGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATTC----GTATCTGTATT 7506 Query 172224 C-TAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGC 172282 | |||| || || |||||||| |||||||||||||||| |||||||| ||||| Sbjct 7505 CTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGC 7446 Query 172283 AATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 172342 |||||| |||| |||| ||||| | |||||||||||||| |||||||| ||||| || Sbjct 7445 AATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCA 7386 Query 172343 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 172402 ||||||||||| || ||| | | |||| || ||| ||||||| || || |||||||| Sbjct 7385 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAAC 7326 Query 172403 AGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTAC 172462 ||| | |||||||| | |||| | ||| ||| ||| Sbjct 7325 TGTAGAAAACACATTATTCGAAG------------ATGGTGATGGT---------GCTAA 7287 Query 172463 AACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAA 172522 |||||| | || ||| | || ||||| | ||||||||||| ||| | |||||||| Sbjct 7286 CACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAA 7227 Query 172523 CAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCT 172582 |||||||||||||||||| || ||| |||| ||| | |||||| | | ||||||||| | Sbjct 7226 CAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTT 7167 Query 172583 TATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGC 172642 ||| | |||||||| || | ||| | |||| | || || | | || | || Sbjct 7166 CATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGC 7107 Query 172643 ACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGA 172702 | ||||| ||||| || || ||||| ||||| || || |||| || ||||| || || Sbjct 7106 TTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGA 7047 Query 172703 GTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGGTATGAGAGCATGGATGT 172761 ||||||||| ||||| || || || | |||| || ||||||||||| | || |||||| Sbjct 7046 GTTTGAAACATTCTATACAAAAAATA-TCTTATTAAATGAAGGTATTCGTGCGTGGATGG 6988 Query 172762 CATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCA 172821 | || || ||||| || || || || ||||| |||||||| || || || || | Sbjct 6987 CTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTA 6928 Query 172822 ACGCACTATAA 172832 |||| || ||| Sbjct 6927 ACGCTCTTTAA 6917 >seq1186 Length=9024 Score = 306 bits (338), Expect = 4e-78 Identities = 348/465 (75%), Gaps = 4/465 (1%) Strand=Plus/Minus Query 171195 TAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTG 171254 |||||||||| ||||| ||| |||||| || ||| | || |||||| | ||| | Sbjct 5900 TAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAG 5841 Query 171255 CAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTC 171314 | ||||||||||| |||| || |||||| ||||| | || |||||||| ||||| || Sbjct 5840 CTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAA--TC 5783 Query 171315 AA--AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCA 171372 | ||| || || |||||||| |||||||||||||| || ||||| || ||||| || Sbjct 5782 AGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 5723 Query 171373 TGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACA 171432 || ||||| ||| | ||||||||||| || || |||||||||||||||||||||||||| Sbjct 5722 CGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACA 5663 Query 171433 CTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTAC 171492 ||||||| | |||| | || || || ||| | ||||| || || | ||| | | || Sbjct 5662 CTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAAC 5603 Query 171493 AATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAA 171552 ||||| |||||| | ||||| |||||||||||||| ||||||||||| | | || Sbjct 5602 TATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCG 5543 Query 171553 GATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCA 171612 | || || |||| || | | ||| | || ||| | || ||||| || ||||| Sbjct 5542 TGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCA 5483 Query 171613 TGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 |||| | || || ||||||||||| |||||| |||| |||| ||| Sbjct 5482 TGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 266 bits (294), Expect = 4e-66 Identities = 273/354 (77%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || || |||||| | || || ||||| || || | ||| | |||||||| ||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| |||| |||| ||| || || ||||| | |||||||||||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCT 8703 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 || || || ||||| || ||| | || |||||| | ||||| || ||||| ||||||||| Sbjct 8702 CCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAAC 8643 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 |||||| |||||||||| | || | || ||||| || || ||||||||||| || || Sbjct 8642 ATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATT 8583 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 ||||||||||| || | ||||||||||| |||||||| ||||||||||| ||| | || Sbjct 8582 TGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 8523 Query 170966 TTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATC 171018 | ||||||| | | || |||| ||| |||||||| | |||||||| |||| Sbjct 8522 TGCCACTTCTTCTTAGGTATCTGCTG-TTACATGGGCCGTGAGTGGGAATTATC 8470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570250743864120