Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7 141 2e-28 >seq7 Length=421595 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 ||| ||| |||| ||||| |||||| | || ||||||| ||||| || | || || || Sbjct 313260 CGCGCAGCAGCTGTGGTTCGCCATCCTCGAGGCGCAGATCGAGACGGGCAACCCGTACAT 313319 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | ||||||| || ||||||||||||||||| ||||||||| |||| || || || || Sbjct 313320 GCTGTACAAGGACTCGTGCAACCGCAAGTCTAACCAGCAGAACCTGGGGACCATCAAGTG 313379 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 |||||| || || ||||| | || ||||| ||||||||||| || || || Sbjct 313380 CTCCAACCTGTGCACTGAGATCGTGGAGTACACGAGCGAGGACGAGACTGCAGTGTGCAA 313439 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGA 364325 ||| ||||| |||||||| ||| ||||| || || Sbjct 313440 CCTGGCGTCCATCGCGCTGCCGCGCTTTGTCAAGGA 313475 Score = 105 bits (116), Expect = 2e-17 Identities = 278/420 (66%), Gaps = 16/420 (4%) Strand=Plus/Plus Query 363401 AGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGC 363460 ||||| ||||| |||||||| || ||||| || | | |||| ||||| |||| Sbjct 312097 AGACGCTGGAGCGCTCCTACCTCCTGCGCATCAACGGCAAGGTCATTGAGCGCCCCCAGC 312156 Query 363461 ATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG---TTGATGCCGCGATTG 363517 | ||| | ||||| || || | || ||||| | ||||| | |||||||| || Sbjct 312157 ACATGCTGATGCGCGTGGCCGTGGGCATCCA---CAAGGATGACATCGATGCCGCCATCA 312213 Query 363518 AAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTAC 363573 | || || | || ||| || ||| || ||||||||||| | || || | | | Sbjct 312214 ACACGTACCACCTCATGTCTGAGCGCTGGT----TCACGCACGCCTCCCCCACCCTCTTC 312269 Query 363574 AATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGAT 363633 || | || || | || ||| |||| || ||||| || | ||| ||||| Sbjct 312270 AACTCCGGCACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTGGTGTGTGCCAAGAACGAT 312329 Query 363634 TCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGC 363693 |||||||| || |||| |||||| || ||| | |||||| | || |||||| || ||| Sbjct 312330 TCCATCGACGGCATCTATGACACGCTCAAGGAGTGTGCTGTGATCTCCAAGTCGGCCGGC 312389 Query 363694 GGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGGCACAGG 363752 || || || | || |||||||| | |||| ||| | | ||||| |||||||| Sbjct 312390 GGCATCGGCCTCTCCATCCACAACATACGTGCCACCG-GCTCGTACATCCGCGGCACCAA 312448 Query 363753 GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGT 363812 || ||| || || | || |||||||| || || || | | ||||| |||| || Sbjct 312449 CGGTACCTCCAACGGTGTTGTGCCCATGCTGCGCGTCTTCAATGACACTGCCCGGTATGT 312508 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/186 (71%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 363800 CTGCG-AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 ||||| || ||||| ||||||||||| || |||||||| || || |||||||| || | Sbjct 312733 CTGCGCAGCTACGTGGACCAGGGTGGTGGCAAGCGCAAGGGCGCCTTTGCTATCTACATG 312792 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 ||||| || || || | |||||||| || || || || || ||| || || ||| Sbjct 312793 GAGCCCTGGCACGCAGACGTGTTTGAGTTCCTAGACCTACGCAAGAACCACGGCAAGGAG 312852 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 || || || ||||| || || || | || ||| | ||||| || ||| |||| Sbjct 312853 GAGGCACGCGCGCGTGACCTCTTTTACGGCCTGTGGATCAATGACCTGTTCATGGAGCGT 312912 Query 363979 GTGGAG 363984 |||||| Sbjct 312913 GTGGAG 312918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303311300880806