Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq28 118 1e-21 seq7 118 1e-21 seq533 111 1e-19 seq2326 104 2e-17 seq2016 98.7 9e-16 seq493 98.7 9e-16 seq503 95.1 1e-14 seq67 91.5 1e-13 >seq28 Length=264079 Score = 118 bits (130), Expect = 1e-21 Identities = 127/167 (76%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 ||||| || ||||| | ||||||||||| |||||||||| |||| ||||| ||| Sbjct 66588 ACTTT-GCTGAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCC 66530 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 || | ||||||| | |||| | ||| |||||||||||||||| ||| |||| Sbjct 66529 TTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAAC 66470 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 ||||| || || || |||||||||||||| || |||||||| || || Sbjct 66469 GAGCTCATCTCCCGTGACGAGGGCCTGCACACCGACTTTGCATGCCT 66423 >seq7 Length=421595 Score = 118 bits (130), Expect = 1e-21 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCG-TCGCTGTATTGTACGATCTC 145683 ||||| ||||||| || || ||||| ||||| || || ||| |||| | |||||||| Sbjct 313454 GCGATGGACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCG-TGTACTCCACGATCTC 313396 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | ||||| ||| || |||||||| ||||| || ||||| ||| || | |||||| Sbjct 313395 AGTGCACAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCA 313336 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797 || ||||||||| ||||||||||| ||| ||||| | ||||| ||| | ||| Sbjct 313335 CGAGTCCTTGTACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGAT 313282 Score = 104 bits (114), Expect = 2e-17 Identities = 300/457 (66%), Gaps = 15/457 (3%) Strand=Plus/Minus Query 144749 GTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGAC 144808 ||||||| ||||||||||| || ||||| ||| ||| | ||| ||||| ||| Sbjct 314607 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGAC 314548 Query 144809 GTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATG 144868 || | | || | |||| |||| || |||| || | ||| ||||| || || ||| Sbjct 314547 GTGAGCTTGCCGAAGTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCGATG 314488 Query 144869 AAAGCGTTGCGGTCGGCGGCCATCTCAATCAT---ACGTTTGCATTTCATTTCCCAAGCG 144925 || || || || |||||||| || | || ||| | || || || ||||| | Sbjct 314487 AAGGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCT-GC--TTGATCTCCCACACC 314431 Query 144926 GTCTTGTACA---AACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCC 144982 |||||||||| | || | | || || ||| || | ||||| | ||||| Sbjct 314430 GTCTTGTACAGGGAGCGC---AGCTCATCAGGGATG---TCCAGAGCCTGGACTGACCCG 314377 Query 144983 TTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCG 145042 ||| ||| | | ||||| || || | | |||| | | || |||| Sbjct 314376 TTGGCCGCCACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTCG 314317 Query 145043 TCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACG 145102 | | | || ||| || |||||| |||||||| | || ||| || |||| || | | Sbjct 314316 TGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATG 314257 Query 145103 TTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTG 145162 || || ||| |||| ||||| ||||||| || ||||| || || | ||| | ||||||| Sbjct 314256 TTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTG 314197 Query 145163 GGCATGTACGCCACCAATAATGAATTGCGCAGGCCGT 145199 |||||| ||||| || | || ||||||| ||||| Sbjct 314196 GGCATGGGCGCCAGCAGCAGCGAGTTGCGCACGCCGT 314160 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 46093 GTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCC 46152 ||| ||||||| || ||||||| || ||||||||| | | |||| || || || Sbjct 151558 GTGGGCAAGAAGGCCAACTGGGCAATCAAGTGGATCTCCTC--GGACCGT-ACGTTTGCT 151502 Query 46153 GAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCC 46212 ||||| |||| || ||||| ||||||||| || ||||||||| || ||| Sbjct 151501 GAGCGCTTGGTCGCGTTTGCCTGCGTGGAGGGCATCCACTTTTCTGGCTCCTTCTGTGCC 151442 Query 46213 ATCTTTTACATCAAAACCAAGGGCA--TCATGCCCGGCCTGACGTTTAGCAACGAGCTGA 46270 ||||| | |||||| | ||| ||||||||||||| | || |||| || | Sbjct 151441 ATCTTCTGGCTCAAAA--AGCGGCTGCTCATGCCCGGCCTCTCCTTCTCAAACGTCCTCA 151384 Query 46271 TATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG 46307 | || || ||||| |||||||| || ||||||||||| Sbjct 151383 TCTCTCGTGACGAAGGCCTGCACACCGACTTTGCGTG 151347 >seq533 Length=40786 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 130993 CACTTTCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGA 131052 |||||||| || | ||||||||||| || ||||| | || | || |||||||| || Sbjct 40083 CACTTTCAGCAGGCACCACCGCGCAAGCGAAGCACCAGGTGCAGCGTGGACTCCTTCTGG 40142 Query 131053 ATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGC 131112 |||||||| || || |||||| |||||| ||||||||||| ||| |||| | ||| Sbjct 40143 ATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGC 40202 Query 131113 TGCTGGTCCGGAGGGATTCCT 131133 |||||||| || ||||| ||| Sbjct 40203 TGCTGGTCAGGGGGGATGCCT 40223 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||||| || |||||||| ||| Sbjct 40474 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 40533 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 40534 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 40593 Query 131127 GATTCCT 131133 ||| ||| Sbjct 40594 GATGCCT 40600 >seq2326 Length=1360 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||||| || |||||||| ||| Sbjct 645 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 704 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 705 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 764 Query 131127 GATTCCT 131133 ||| ||| Sbjct 765 GATGCCT 771 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||||| || |||||||| || Sbjct 1014 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 1073 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 1074 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 1133 Query 131127 GATTCCT 131133 ||| ||| Sbjct 1134 GATGCCT 1140 >seq2016 Length=2168 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 130997 TTCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGT 131056 |||| || | |||||||||| || ||||| | || | || |||||||| || |||| Sbjct 1429 TTCAGCAGGCACCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGT 1488 Query 131057 TGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCT 131116 |||| ||| || |||||| |||||| ||||||||||| ||| |||| | ||||||| Sbjct 1489 TGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCT 1548 Query 131117 GGTCCGGAGGGATTCCT 131133 |||| || || || ||| Sbjct 1549 GGTCAGGGGGAATACCT 1565 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||||| || |||||||| ||| Sbjct 1820 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 1879 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 1880 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 1939 Query 131127 GATTCCT 131133 || ||| Sbjct 1940 AATACCT 1946 >seq493 Length=45929 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||||| || |||||||| ||| Sbjct 45700 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 45641 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 45640 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 45581 Query 131127 GATTCCT 131133 || ||| Sbjct 45580 AATGCCT 45574 >seq503 Length=44646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||||| || |||||||| || Sbjct 44636 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 44577 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 44576 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 44517 Query 131127 GATTCCT 131133 ||| ||| Sbjct 44516 GATGCCT 44510 >seq67 Length=188910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 131014 CGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTG 131073 |||| |||||||| | || | || |||||||| || |||||||| ||| || |||| Sbjct 176519 CGCAGGCGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 176578 Query 131074 CGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || |||||| ||||||||||| || |||| | ||||||||||| || ||||| ||| Sbjct 176579 CGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGCGGGATGCCT 176638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997854894720