Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2326 87.8 1e-12 seq2016 87.8 1e-12 seq533 87.8 1e-12 seq503 87.8 1e-12 seq493 87.8 1e-12 seq67 86.0 5e-12 >seq2326 Length=1360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || |||||||||||||||| ||| | ||||| Sbjct 661 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 720 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| || | || || ||||| ||||| Sbjct 721 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 758 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || ||||||||||| |||| ||| | ||||| Sbjct 1030 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 1089 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| || | || || ||||| ||||| Sbjct 1090 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1127 >seq2016 Length=2168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || |||||||||||||||| ||| | ||||| Sbjct 1455 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1514 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| || | || || ||||| ||||| Sbjct 1515 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1552 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || |||||||||||||||| ||| | ||||| Sbjct 1836 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1895 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| || | || || ||||| ||||| Sbjct 1896 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1933 >seq533 Length=40786 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || |||||||||||||||| ||| | ||||| Sbjct 40490 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 40549 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| || | || || ||||| ||||| Sbjct 40550 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || ||||||||||| |||| ||| | ||||| Sbjct 40113 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 40172 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| || | || || ||||| ||||| Sbjct 40173 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40210 >seq503 Length=44646 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || ||||||||||| |||| ||| | ||||| Sbjct 44620 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 44561 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| ||| | || || ||||| ||||| Sbjct 44560 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 44523 >seq493 Length=45929 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || |||||||||||||||| ||| | ||||| Sbjct 45684 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 45625 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 |||| || ||||| || | || || ||||| ||||| Sbjct 45624 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 45587 >seq67 Length=188910 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 16715 CGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTT 16774 || || | ||| || | ||||| ||||||||||| || |||||||||||||||| ||| Sbjct 176519 CGCAGGCGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 176578 Query 16775 TTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||||||||| || ||||| ||| | || || ||||| ||||| Sbjct 176579 CGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTC 176625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405075494553670