Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1904 143 2e-29 seq1576 116 2e-21 seq961 89.7 3e-13 seq4 82.4 5e-11 >seq1904 Length=2618 Score = 143 bits (158), Expect = 2e-29 Identities = 94/104 (90%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 25893 GTTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GG 25947 |||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1717 GTTTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 1776 Query 25948 TAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1777 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 1820 >seq1576 Length=4472 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1028 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1087 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 1088 GCCAATATTTAGCCTTA 1104 >seq961 Length=14420 Score = 89.7 bits (98), Expect = 3e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 19965 TTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTTA 20023 ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 3100 TTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAATATTTAGCCTTA 3158 >seq4 Length=577248 Score = 82.4 bits (90), Expect = 5e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATC 19998 || |||||| |||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 290322 TTACTCTCTTTTCAAAGTTCTTTTCATCTTTCCTTCACGGTACTTGTTCGCTATC 290376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936859865923