Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1134 544 9e-150 seq1186 379 2e-100 seq681 100 3e-16 >seq1134 Length=9887 Score = 544 bits (602), Expect = 9e-150 Identities = 736/1023 (72%), Gaps = 2/1023 (0%) Strand=Plus/Minus Query 167297 TGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 167356 ||||| |||| | ||||||||| | | ||||| || || || || || ||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 167357 GGATTACTTCTTTTTCCCAC-TGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGAC 167415 || ||| || || |||||| |||||| | ||| | ||||| ||| | ||||| || || Sbjct 7876 GGTTTA-TTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 167416 GTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTT 167475 |||||||| ||||| || || || || || || |||| | || ||| ||| || Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | || ||||| || |||||||||||| || |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| | || || ||||| | | |||| ||| || || || | ||| |||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 || || | ||||| || |||| | | || || || ||| | || |||||||| || Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | ||| | ||||||||||| || || ||||| || | || ||| |||| || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 || ||||| || | || || ||| | || || || |||||||||| ||||| || Sbjct 7517 CGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTT 7458 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||||||||| || || | || | |||||| | ||||||||||| |||||||| || Sbjct 7457 TGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCT 7398 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| ||||| |||||||| ||||||||| | |||| | ||| || | | |||||| Sbjct 7397 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAAT 7338 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 || |||| || ||||| || || | | ||||||||||| || ||||||||| Sbjct 7337 TCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCG 7278 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || || | | || || | || |||||||| || ||||| ||||||||| ||||||| Sbjct 7277 TGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTG 7218 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| || ||||| ||| | ||||| || || || ||||| |||||||| ||||| || Sbjct 7217 GTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATT 7158 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 ||| || || | || ||||||| ||| | ||||| | || || | || | || || Sbjct 7157 CGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCT 7098 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 | || ||||| ||||| ||||||||| | |||| || || ||||| ||||||||||| Sbjct 7097 AAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAAC 7038 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 |||||||| ||||| ||| | | |||||||| | ||||| ||||||||| | ||| Sbjct 7037 ATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGA 6978 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTG 168315 ||||||||| ||| || |||||||| ||||||||||| || | || |||||||| | Sbjct 6977 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTTA 6918 Query 168316 ATA 168318 ||| Sbjct 6917 ATA 6915 >seq1186 Length=9024 Score = 379 bits (420), Expect = 2e-100 Identities = 376/484 (78%), Gaps = 2/484 (0%) Strand=Plus/Minus Query 166576 AACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTT 166635 || ||| | |||||||| ||||| ||| | ||||| || |||||||| ||||| ||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 166636 TTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACT 166695 ||||| || |||||||| | || ||||| || | ||||||| || ||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 166696 GAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCT 166755 || || ||| |||||||||||| |||||||||||||| || ||||||||||| ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 166756 GCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCG 166815 || || |||||||| ||||| | ||||||||||||||||| |||||||||||||| || Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 166816 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTT 166875 | ||||||||| | || || ||||| ||||| |||| |||||||| ||| | ||| || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGT-TT 5609 Query 166876 AGCACC-ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCA 166934 | || | ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5608 ATCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCA 5549 Query 166935 GGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGT 166994 |||||||| | ||||||||||| || || ||||||||||| | |||||||| || Sbjct 5548 AGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGT 5489 Query 166995 AATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGAGTCCACTCC 167054 |||||| || ||||| ||||||||||||||||| || | ||| ||| ||| | || | Sbjct 5488 AATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTC 5429 Query 167055 TGTG 167058 |||| Sbjct 5428 TGTG 5425 Score = 246 bits (272), Expect = 3e-60 Identities = 272/360 (76%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 166054 TTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTG 166113 |||||||| ||| | || ||||| | |||||| | || | |||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 166114 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACC 166172 ||||| || ||||| || |||| || ||||| |||||| |||| ||| | || || || Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 |||||| || |||||||| ||||||||||| || | || || || | || |||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCAT 166292 ||||||| ||||||||||| |||| | || ||||| || ||| | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 166293 CTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGT 166352 ||||||||||| || ||||| || ||| | || ||||||||||||| ||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 166353 CTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCG 166412 | ||||||| || | || |||| |||||||| ||||| |||||||| |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 166420 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 166479 |||||||| ||||| || || |||||||| || || || || ||| | || || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 166480 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTA 166531 | |||| ||| |||||||||||||||||||||||| ||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 166586 TGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAA 166645 ||| | | ||||| ||| | ||||| || ||||| |||||||| ||| | ||||| ||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 166646 TGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAA 166705 ||||||| | || ||||| || | ||||||| || ||||| | || || | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 166706 ACTATGGTTACAAGTTTGGTCAAGAAGA----AGAGACCTACAACATCGTGGC 166754 || |||||||||||| |||||||| || ||| || ||||||||||| || Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567214040016800