Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq27 219 9e-52 seq449 163 6e-35 seq278 96.9 7e-15 seq28 95.1 2e-14 seq7 86.0 1e-11 >seq27 Length=268247 Score = 219 bits (242), Expect = 9e-52 Identities = 755/1158 (65%), Gaps = 36/1158 (3%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || || || ||||||||||||||||| || | || ||||| || | | ||||| Sbjct 220868 CTTTCCGGCGGCTGGAAGATGAAGCTGGCGCTGGCGCGTGCCATGCTGCAGAAGGCCGAC 220809 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| ||||| |||||||| |||||||| ||||| | |||||| || ||||| | Sbjct 220808 ATCCTGCTGCTGGATGAGCCCACCAACCATCTGGACGTCCACAACGTGGCGTGGCTGCAG 220749 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| | | |||| | || | || |||| || || |||||||||||||| Sbjct 220748 AACTACCTGGTCGGCCTGACCCACGTGACCTCAGTCATGGTGTCCCACGACTCTGGCTTT 220689 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCAC 279944 || || | ||| | |||| | ||||| ||| || | |||||| | || Sbjct 220688 CTCGACTTCTGCTGCACCAACATCCTGCACTACGAG---AACCGCAAGCTCAAGATCTAC 220632 Query 279945 ATCGGCAACCTGTCTGCTTTCGTG--GCAAAGCGCCCTGAGGCGGCCGCCTACTATGACC 280002 |||||||||||| | |||||| ||| | |||| |||||| | ||||||| || | Sbjct 220631 CGCGGCAACCTGTCCGAGTTCGTGAAGCAGAA-GCCC-GAGGCGCGCTCCTACTACGAGC 220574 Query 280003 TGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACAT 280062 || || | || || | | | ||||||||||| || || |||||||| ||| Sbjct 220573 TGTCGGCCTCCCCCATCTCCTTCAAGTTCCCTGAGCCCGGCTTCCTGGAGGGTGTCAAGA 220514 Query 280063 CAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCC- 280121 | ||||| || ||| | ||| | ||| ||| || ||||| |||| Sbjct 220513 CCAAGGACAAGGCCATCCTCAAGATGATGAAGGTCGGCTTCAAGTACCCCAA-GGCCGAG 220455 Query 280122 ---AACAT-CT-TCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCA 280176 |||| || || | ||||| | || | | || ||| || | | || Sbjct 220454 AAGAACACGCTGTCCGACGTGTCCATCTACA--TCACCCTGTCCTCCCGTGTGGCGGTGC 220397 Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 | || |||| || || || ||||| ||| | ||||| | ||||| ||||||| || Sbjct 220396 TGGGCGCCAACGGCGCCGGCAAGTCGACCATGATCAAGCTGCTGACCGGCGAGATGGAGC 220337 Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 || ||||| |||| |||||||| |||||| |||| || || ||||| || ||||||| Sbjct 220336 CCTGCGAGGGCACCGTGTGGAAGCACCCCAACCTGCGTATCGCGTACGTGGCGCAGCACG 220277 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 | ||||||||||||||| | |||||||| | ||| | ||||| ||||| |||||||||| Sbjct 220276 CGTTCCACCACATCGAGCAGCACCTGGAGAAGACCGCGAACCAGTACATCCAGTGGCGCT 220217 Query 280357 ATGCAAGTGGGCAGGATCTGGAGTCGGTGGATCGCTCTGAACGC---AATGCCGCCGATA 280413 | || | ||| |||| | ||| || || | ||| ||| | | | || Sbjct 220216 ACGCGATTGGTGAGGACCGTGAGGCGCTGAACAAGGTTGACCGCCAGATCACTGAGGAGG 220157 Query 280414 CCGCCAAGATGTATGAGGTCA--AGGTCATCGATGGTGTCAAGAA--GTCTC-TCGACCG 280468 ||||||| | ||| | || || || | || | | |||| | || | || || Sbjct 220156 AGGCCAAGAAG-ATG-GCGCAGCAGATCGTGATTGACGGCCAGAAGCGCGTCGTGGAGCG 220099 Query 280469 CATTGGAGGCCGCAGGAAGCTAAAGCGCTCCTATGAGTATGAGGTGTTCTGGAAG----A 280524 ||| ||||| | ||||| ||| | ||| ||||| |||||| ||| | Sbjct 220098 CATCCTGGGCCGTCGCAAGCTCAAGTCCAGCTACGAGTACGAGGTGCAGTGGGTGGGCTG 220039 Query 280525 ATGACGAGACCTCAAC--TTGGATTGTCCGCGAGACCCTGGAGCAGCTTGGCTTCCAAAA 280582 | | ||| ||| ||||| ||| || ||||| |||| | ||||| | || Sbjct 220038 CGGCCCCGACAAGAACGTGTGGATGCCCCGTGACGACCTGGTGCAGATGGGCTTTGAGAA 219979 Query 280583 GCTCCTCAATGACATCGACGCCAAGGATGCCGCTGCCA--ATGGTCTGCTAGGGAAACCT 280640 | | | || | || |||||||| || || ||| || || | | || || Sbjct 219978 GATGGTGGTGGAGGTGGATGCCAAGGAGGCGGC--CCAGGCCGGCCTCATGGCCAAGCCC 219921 Query 280641 CTGACTGCCAAGAATGTTGAGGACCATATGACCAAGCTGGGTCTGGACCCCGAGTTTACA 280700 ||||| | || || || | || | | | || || || ||||||| | Sbjct 219920 CTGACCTCGCTCAACGTCCAGAAGCACCTCGAGGACTTTGGCCTCGAGTCCGAGTTCTCC 219861 Query 280701 ACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA 280760 || ||||| | ||| ||||| || || || |||||||||||||| | || | || || Sbjct 219860 ACCCACTCGCTCATGCGCGGCCTGTCGGGCGGCCAGAAGGTCAAGGTGGTGCTGGGCGCG 219801 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 || ||||| | |||| ||| | | || ||||||||||| |||||||| ||||||||| Sbjct 219800 GCCATGTGGAACAACCCCCACATCCTGGTGCTCGACGAGCCCACCAACTACCTGGACCGC 219741 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||||||| ||| Sbjct 219740 GACTCCCTGGGCGCGCTG 219723 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 279424 AGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGC 279483 |||||||||| || || ||||| ||| ||||| || || || ||| ||| || |||| Sbjct 221421 AGCGTGGCAAGCGTTACGGTCTGTGCGGCCCCAACGGCGCTGGCAAGTCCACGCTGATGC 221362 Query 279484 GCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGT 279543 ||||||| || ||||| ||| | || || || ||| | | ||||| | | ||| |||| Sbjct 221361 GCGCCATCGCCAACGGCCAGGTCGAGGGCTTCCCTCCCCCGACTGAGCTGAAGACCGTGT 221302 Query 279544 ATGTAGAGCACGACATCGAC 279563 | || ||||||||||| ||| Sbjct 221301 ACGTGGAGCACGACATTGAC 221282 >seq449 Length=50303 Score = 163 bits (180), Expect = 6e-35 Identities = 306/448 (68%), Gaps = 9/448 (2%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || |||||| ||||||||||||| || |||||||| ||| ||||||| || || ||| Sbjct 36462 GAGTTCATCAACAAGGAGCTCATCCTCTTCTCGCGCGCTGACCTGGAGCGATCCATCCCC 36521 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 ||| ||||||| || || ||||| ||||| |||||||| || | |||||||| Sbjct 36522 AGCATGGTGGACGGTCTGAAGCCTGGCCAGCGCAAGATCCTATTCTCATGCTTCAAGCGC 36581 Query 218638 AACCTGGTTCAA----GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 |||| |||| || || ||||| | ||| | | |||||||| ||||| || Sbjct 36582 AACC----TCAAGTCGGACATCAAGGTGGTGCAGCTGGCAGGTTATGTGTCCGAGCACTC 36637 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||| ||||| ||| | ||| | |||| | | |||||||||||| Sbjct 36638 GGCGTACCACCACGGCGAGGCGTCCCTGTCCGCCACCATCATCAACCTGGCACAGGACTT 36697 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 ||||||| |||||||| ||| ||||| | ||| ||||||||||| | || || Sbjct 36698 TGTGGGCTCCAACAACATCAACCTGCTGGTGCCCTCAGGTCAGTTTGGCACGCGGCTGCA 36757 Query 218814 GGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 |||||| |||||| ||| || | || |||| || || ||||| | ||||| Sbjct 36758 GGGTGGCAAGGATGCTGCCAGCCCCCGTTACATCTACACCCGCATGGCGCCCCTCACGCG 36817 Query 218874 CCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTC 218933 ||| ||||||| |||| || || ||| || ||| || | || || || Sbjct 36818 CCACCTGTTCAACGAGGCGGACGACCAGCTGCTGGCGTACCTGAACGAGGAGGGGCAGAG 36877 Query 218934 GATTGAGCCCGAGTGGTATGTGCCTGCT 218961 ||||||||||| |||| ||| ||||| Sbjct 36878 CATTGAGCCCGACTGGTGCGTG-CTGCT 36904 >seq278 Length=83558 Score = 96.9 bits (106), Expect = 7e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 279714 GGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTG 279773 || ||||||||||||||||| || | | || || || |||| ||| || |||| ||| Sbjct 25331 GGCTGGAAGATGAAGCTGGCGCTGGCGAGGGCGATGCTGCTGCATGCTGACATCCTCCTG 25390 Query 279774 CTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 || |||||||| ||||||||| |||||||||||||||| Sbjct 25391 CTGGATGAGCCCACCAACCACTTGGACACCACCAACGT 25428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 ||||||| ||||| ||||| || || |||||||| ||||| ||| | | | |||| || Sbjct 24213 ACTGTGAATTCTCACTCGCGTACGGCGGGAAGATCCTGCTGAACAATGCAAGGCTCATCA 24272 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 ||||||| ||| ||| || || || |||| |||| |||| ||| ||| || || | Sbjct 24273 TCAAGCGCGGCCGCCGCTACGGCCTGTGCGGTGCCAACGGAGTGGGCAAGTCGACGCTGA 24332 Query 279481 TGCGCGCCATTGCAAACGGTCA-GCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACA 279539 ||||||| ||||| || || | |||| || || || | | || | | || Sbjct 24333 TGCGCGCGATTGCTG-CGAACAAGGTGGACGGCTTCCCACCCCCGGACCAGCTGCGCACT 24391 Query 279540 GTGTATGTAGAGCACGACATC 279560 || ||||| |||||||||||| Sbjct 24392 GTCTATGTGGAGCACGACATC 24412 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 || || || |||||||| | | ||||| ||| || || || || || || || ||| Sbjct 27532 GGGCTCGAGCCCGAGTTCTCCATGCACTCGAACATCCGGGGCCTGTCGGGCGGGCAAAAG 27591 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| || || ||| || || ||||||| |||| ||| || || | | |||||| Sbjct 27592 GTCAAGCTGGTGCTCGCGGCGGCGATGTGGCAGAACCCCCACATGCTCATCATGGACGAG 27651 Query 280800 CCTACCAACTATCTGGACCGCGAG 280823 || |||||||| |||||||||||| Sbjct 27652 CCCACCAACTACCTGGACCGCGAG 27675 >seq28 Length=264079 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| |||||||| || ||||| ||||||||| | |||||| ||||| | || Sbjct 66440 GTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGGCC 66499 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||| | ||| ||||| || || || | | ||||| ||| Sbjct 66500 ACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAAAAGAAGATGCCCTCCACAGC 66559 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990 | | || || |||||||||||||| Sbjct 66560 AGCAAAGGCCACTAGGCGCTCAGCAAA 66586 >seq7 Length=421595 Score = 86.0 bits (94), Expect = 1e-11 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| || ||||| ||| ||||| |||| || | ||||| ||||| | | Sbjct 151361 GTGCAGGCCTTCGTCACGAGAGATGAGGACGTTTGAGAAGGAGAGGCCGGGCATGAGCAG 151420 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || || ||||||||||||| || || ||||| ||||| || | | ||||| || || Sbjct 151421 CCGCTTTTTGAGCCAGAAGATGGCACAGAAGGAGCCAGAAAAGTGGATGCCCTCCACGCA 151480 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCA 252023 | | || || | |||||||||||||| |||| || | |||| |||||| Sbjct 151481 GGCAAACGCGACCAAGCGCTCAGCAAACGTACGGTCCGAGGAGATCCACTTGATTGCCCA 151540 Query 252024 TGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTC 252083 |||||||| || || | ||| | ||| | ||| ||| |||||| ||| ||||| Sbjct 151541 GTTGGCCTTCTTGCCCACAGTGGGCACTGTGTGGATGGCACGAAAGAGGTCGTTGCGCTC 151600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027803442520253