Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 266 6e-66 seq28 131 3e-25 >seq7 Length=421595 Score = 266 bits (294), Expect = 6e-66 Identities = 557/821 (68%), Gaps = 28/821 (3%) Strand=Plus/Minus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 |||||||||||||||||||||||| || | ||| |||| | ||| | || ||| || Sbjct 314602 CAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGACGTGAG 314543 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| ||||| || || || | ||||| ||||||||||| Sbjct 314542 CTTGCCGAAGTTG------GGGTC-----CGG-CATGAACACGTTGAACGACTGGCTCTG 314495 Query 243895 GTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 ||||| ||||| | | || || ||||||||| | || | ||| ||||| | Sbjct 314494 GTCGATGAAGGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCA 314435 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC 244014 | |||||||||| | || || | || |||| || | ||| || || || Sbjct 314434 CACCGTCTTGTACAGGGAGCGCAGCTCATCAGGGATG---TCCAGAGCCTGGACTGACCC 314378 Query 244015 CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGC 244074 ||| | | |||| | | || | | |||||||||||||| ||| | ||| | Sbjct 314377 GTTGGCCGCCACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTC 314318 Query 244075 CTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAG 244134 | | ||||||| |||||| ||| ||||| |||||||||||||||||| ||||| Sbjct 314317 GTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGAT 314258 Query 244135 GTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGT 244194 |||| | || ||||| | || ||| |||| ||||| ||||| | ||| || || Sbjct 314257 GTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGT 314198 Query 244195 CGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAG 244254 |||||||||| || |||||| ||| | |||||||| ||| || ||||| | Sbjct 314197 GGGCATGGGCGCCAGCAGCAGCGAGTTGCGCACGCCGT-----TGGCGGCAATGTCTGCG 314143 Query 244255 CTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTG 244314 | | |||| |||| | || || ||||| || || | ||||||||||||| ||| Sbjct 314142 CGCAGGCCAG-CCCA---GTCCCAGCGGTCCGAGCCCTTCATGCCCCACATGTCATGCTG 314087 Query 244315 CAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGC 244374 ||||| |||| || ||| ||| ||| ||| ||||| || || || ||| Sbjct 314086 CAGCACGCCCTGAGACACAGGGGAGCCAGGGTATGTCTCATAGGGGCCCTCCTTCTTGGC 314027 Query 244375 CAGCT-TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCA 244433 ||||| | | || || ||||| |||||||||||| ||| ||||| |||||||| Sbjct 314026 CAGCTCCATGGACGTCTTC-AGGGCCGCGTAGTAGATGCACTCAAAGATGTCCTTGTTCA 313968 Query 244434 TGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGT 244492 | | |||| | || || ||||| ||||||| || || ||| |||| ||||| Sbjct 313967 GCTGCTGCGCCTCAGGCG-AGTCAAAGGGCATGCCCAGCAGCAGGAACGCGTCAGCCAGG 313909 Query 244493 CCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACG 244552 ||||| || ||||| || ||||| | ||| ||| |||||||||| ||| ||| Sbjct 313908 CCCTGGACCCCGATACCAATGGGGCGGTGGCGCAGGTTGGAGCGCTCGGCGGTCTTCACA 313849 Query 244553 GGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 |||||| ||||| ||||||| | |||||| ||||||||||| Sbjct 313848 GGGTAATAGTTGACGTCGATGATCTTGTTCAGGTTGCGGGT 313808 Score = 123 bits (136), Expect = 5e-23 Identities = 274/405 (68%), Gaps = 16/405 (4%) Strand=Plus/Minus Query 245189 TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 ||||||| |||||| | ||||| | ||||| ||| ||||||||||| |||||| Sbjct 312490 TTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCGTTGGTGCCGCGGATGTAC 312431 Query 245249 GCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATG 245308 | ||| || | | | |||| |||||| | ||| | |||||||| ||||||||| Sbjct 312430 GAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCGCCGGCCGACTTGGAGATC 312371 Query 245309 AGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGC 245368 | || || ||||| ||||| ||||| || ||| || ||| | | Sbjct 312370 ACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAATCGTTCTTGGCACACACC 312311 Query 245369 AGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCG 245428 || |||||||||||||||||||| |||| ||| |||||||| || |||||| |||| Sbjct 312310 AGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTGAAGAGGGTGGGGGAGGCG 312251 Query 245429 TGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTC 245487 || || || ||| |||| || | || |||||| | || || ||||||| || Sbjct 312250 TGCGTGAACCAGC-GCTCAGACATGAGGTGGTACGTGTTGATGGCGGCATCGATGTCATC 312192 Query 245488 GCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT 245546 |||||| || ||| ||| | ||| || |||||||||| ||| ||| ||| Sbjct 312191 CTTGTGGATGCCCACGGC-CACGCGCATCAGCATGTGCTGGGGGCGCTCAATG---ACCT 312136 Query 245547 CGGGTCCCTTG------AGCATGTAGGAGCGCTCGAGCGTCTTGA 245585 | || ||| || | |||||||||||| ||||||| || Sbjct 312135 TG---CCGTTGATGCGCAGGAGGTAGGAGCGCTCCAGCGTCTGGA 312094 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||||||||| || || ||| ||| | | ||||||| || ||||| ||||| ||| Sbjct 313445 GCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCGTGTACTCCACGATCTCAGTGCACAGG 313386 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || |||||||||||| ||||||| ||| || || |||||| |||||| | ||||||| Sbjct 313385 TTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCACGAGTCCTTG 313326 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 || |||||| | || || ||||||| ||| || |||||| Sbjct 313325 TACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGA 313283 Score = 105 bits (116), Expect = 1e-17 Identities = 151/212 (71%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC--GACGCAACGTTCGGCGAGA 42702 |||||||| ||||||| |||| |||||| ||| ||| ||||| | ||| Sbjct 151552 AAGAAGGCCAACTGGGCAATCAAGTGGATC-----TCCTCGGACCGTACGTTTGCTGAGC 151498 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | |||| || ||| || ||| ||||||||| ||| || ||| ||||| |||||| Sbjct 151497 GCTTGGTCGCGTTTGCCTGCGTGGAGGGCATCCACTTTTCTGGCTCCTTCTGTGCCATCT 151438 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| || | || |||||||| ||| ||||||| |||| |||||| Sbjct 151437 TCTGGCTCAAAAAGCGGCTGCTCATGCCCGGCCTCTCCTTCTCAAACGTCCTCATCTCTC 151378 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 | ||||| || ||||| | |||||||| ||| Sbjct 151377 GTGACGAAGGCCTGCACACCGACTTTGCGTGC 151346 Score = 91.5 bits (100), Expect = 3e-13 Identities = 177/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 244915 GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-C 244973 |||||| || ||||| || ||||||| ||| | ||||| || | | || ||| | Sbjct 313002 GTACAGCGCGTCGAAATCCTTGCCCCAGCAGTCGGCGAGGCCAGG-CGCCTCGTTGGGGC 312944 Query 244974 ACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGA 245033 | | || ||| || || || || || | || |||||| ||||| |||||| | Sbjct 312943 AGAACAGGGACCAGTCCTCGTTGTTCTCCACACGCTCCATGAACAGGTCATTGATCCACA 312884 Query 245034 GGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA 245093 || | | |||||||| | | | ||| ||| ||| |||||| | || || | Sbjct 312883 GGCCGTAAAAGAGGTCACGCGCGCGTGCCTCCTCCTTGCCGTGGTTCTTGCGTAGGTCTA 312824 Query 245094 AAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 || ||||| ||||| ||||||||||||||||||||| ||| | |||||| |||| Sbjct 312823 GGAACTCAAACACGTCTGCGTGCCAGGGCTCCATGTAGATAGCAAAGGCGCCCTTGCGCT 312764 Query 245154 TGTTGCCTCCCTGGTCCAC 245172 || || ||||||||||| Sbjct 312763 TGCCACCACCCTGGTCCAC 312745 >seq28 Length=264079 Score = 131 bits (144), Expect = 3e-25 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | || || |||||| | || || |||||||||||||| || ||| ||||| |||| Sbjct 66580 GAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTTCTGCTCC 66521 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || |||||||| || ||||| || ||||| ||||| Sbjct 66520 ATCTTCTGGCTCAAGAAGCGTGGCCTC-ATGCCCGGCCTGACCTTTTCCAACGAGCTCAT 66462 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 | | | |||||||| ||||| | |||||||| ||||| |||| Sbjct 66461 CTCCCGTGACGAGGGCCTGCACACCGACTTTGCATGCCTGCTGT 66418 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 42512 CTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCT 42571 |||||||||||||||||| ||||| |||||| | ||||| ||| ||||| || ||||| Sbjct 66976 CTTCTACGGCTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACTCCCTGCTGCT 66917 Query 42572 CAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGAT 42631 | | |||||| ||| ||| | ||| ||| ||||||| | ||||| || || | Sbjct 66916 GGAGTCCTACATCAAGGACCCCATGGAGAAGAACAAGCTGTTCCATGCCATTGACACCGT 66857 Query 42632 GCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT 42673 ||| || | ||||||||| | ||||| |||| ||||| Sbjct 66856 GCCTTGTGTGGGCAAGAAGGCGCAGTGGGCCATCAAGTGGAT 66815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309299860080