Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq27 174 3e-38 seq449 98.7 2e-15 >seq27 Length=268247 Score = 174 bits (192), Expect = 3e-38 Identities = 452/677 (67%), Gaps = 13/677 (2%) Strand=Plus/Plus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 ||| ||||| || || ||||| ||||| |||||||| | ||| | || || || | Sbjct 220200 GTCCTCACCAATCGCGTAGCGCCACTGGATGTACTGGTTCGCGGTCTTCTCCAGGTGCTG 220259 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 ||||||||||||||| || ||||| |||||||| || | ||||| || || |||||||| Sbjct 220260 CTCGATGTGGTGGAACGCGTGCTGCGCCACGTACGCGATACGCAGGTTGGGGTGCTTCCA 220319 Query 333440 AACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCC 333499 || | || | | || ||||| | || || |||| ||| || | || || || Sbjct 220320 CACGGTGCCCTCGCAGGGCTCCATCTCGCCGGTCAGCAGCTTGATCATGGTCGACTTGCC 220379 Query 333500 CGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 333559 || || || |||| | ||| | | | |||| ||| | | | | ||||| Sbjct 220380 GGCGCCGTTGGCGCCCAGCACCGCCACACGGGAGGACAGGGTGATGTAGATGGACACGTC 220439 Query 333560 GTCAAAGATTAGTTTTTCCGTACCC--GGATACTTGAACCCCACACCGCGT-AGCTTCAT 333616 | | || | ||| ||| || || |||||||| || || | | | | ||| | Sbjct 220440 GG-ACAGCGT-GTTCTTCTCGGCCTTGGGGTACTTGAAGCCGAC-CTTCATCATCTTGAG 220496 Query 333617 GATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGT 333676 |||||| |||||| | ||| |||||| ||||| |||||||| |||||||| | | Sbjct 220497 GATGGCCTTGTCCTTGGTCTTGACACCCTCCAGGAAGCCGGGCTCAGGGAACTTGAAGGA 220556 Query 333677 GGTCTTCGTCTCGGTAAGGGCGTAGTAACT-CGCTGATTCGGGACGCTTCTTCACGAACT 333735 | | | | | || ||||||| ||| | ||||| || ||||||||||| Sbjct 220557 GATGGGGGAGGCCGACAGCTCGTAGTAGGAGCGC-GCCTCGGGCTTCTGCTTCACGAACT 220615 Query 333736 CGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGG 333795 ||||||| || || ||| |||| ||||| |||| ||||| || | || || Sbjct 220616 CGGACAGGTTGCCGCGGTAGATCTTGAGCTTGCGGTTC---TCGTAGTGCAGGATGTTGG 220672 Query 333796 TGCAAACAGC-GTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTA 333854 |||| ||| |||||| || || |||||||| ||||| || || | | |||| | Sbjct 220673 TGCAG-CAGAAGTCGAGAAAGCCAGAGTCGTGGGACACCATGACTGAGGTCACGTGGGTC 220731 Query 333855 AGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGC 333914 ||| || |||||| | ||||||| |||||| || ||||||||||| ||| Sbjct 220732 AGGCCGACCAGGTAGTTCTGCAGCCACGCCACGTTGTGGACGTCCAGATGGTTGGTGGGC 220791 Query 333915 TCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATT 333974 || || || || || | | || ||| | ||||| ||||| || || || || ||||| Sbjct 220792 TCATCCAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGCGCCAGCGCCAGCTTCATC 220851 Query 333975 TTCCACCCTCCTGAAAG 333991 ||||| || || ||||| Sbjct 220852 TTCCAGCCGCCGGAAAG 220868 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 334129 CGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACC 334188 |||| ||||| | ||||| |||||||| | || |||| || || | ||||| | Sbjct 221275 CGGAGCCGTCAATGTCGTGCTCCACGTACACGGTCTTCAGCTCAGTCGGGGGAGGGAAGC 221334 Query 334189 CTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCC 334248 | || | ||| ||||| | || ||||||||||| || || || || || ||||| || | Sbjct 221335 CCTCGACCTGGCCGTTGGCGATGGCGCGCATCAGCGTGGACTTGCCAGCGCCGTTGGGGC 221394 Query 334249 CACACAGACCGTAGCGGTTTCCACGCTTCA 334278 | ||||||||||| || || ||||||| || Sbjct 221395 CGCACAGACCGTAACGCTTGCCACGCTGCA 221424 >seq449 Length=50303 Score = 98.7 bits (108), Expect = 2e-15 Identities = 207/309 (67%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 297463 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 297522 |||||| |||||||||| | || || ||||| || |||| || | ||||||||| Sbjct 36770 ATCCTTGCCACCCTGCAGCCGCGTGCCAAACTGACCTGAGGGCACCAGCAGGTTGATGTT 36711 Query 297523 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 297582 ||| || ||| | |||||||| ||||| | |||||| | ||| || || ||||| Sbjct 36710 GTTGGAGCCCACAAAGTCCTGTGCCAGGTTGATGATGGTGGCGGACAGGGACGCCTCGCC 36651 Query 297583 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 297642 ||||| || || ||||| | || ||||| | ||| | ||||| | ||| | Sbjct 36650 GTGGTGGTACGCCGAGTGCTCGGACACATAACCTGCCAGCTGCACCACCTTGATGTCCGA 36591 Query 297643 CGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATC 297702 | | | ||||||||||| ||| ||| | || || || ||| || | ||| || Sbjct 36590 CTTGAGGTTGCGCTTGAAGCATGAGAATAGGATCTTGCGCTGGCCAGGCTTCAGACCGTC 36531 Query 297703 AACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTC 297762 || | || ||| ||| ||||| || |||||||| | || || ||||||| Sbjct 36530 CACCATGCTGGGGATGGATCGCTCCAGGTCAGCGCGCGAGAAGAGGATGAGCTCCTTGTT 36471 Query 297763 GATGAAGTC 297771 |||||| || Sbjct 36470 GATGAACTC 36462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102844207063550