Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq28 120 4e-22 seq7 105 8e-18 seq449 89.7 6e-13 >seq28 Length=264079 Score = 120 bits (132), Expect = 4e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||||||||||||||| || || || ||| ||| || Sbjct 66429 GCAAAGTCGGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 66488 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | |||||| || | || || || || || |||||||| Sbjct 66489 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAAAAGAAGATG 66548 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||||||| || || || | || |||||||||||| Sbjct 66549 CCCTCCACAGCAGCAAAGGCCACTAGGCGCTCAGCAAAG 66587 >seq7 Length=421595 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || || |||||||| |||||||| | || |||||| | || || Sbjct 151350 GCAAAGTCGGTGTGCAGGCCTTCGTCACGAGAGATGAGGACGTTTGAGAAGGAGAGGCCG 151409 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| |||||| || | |||||| || ||||| || || || || ||| ||| Sbjct 151410 GGCATGAGCAGCCGCTTTTTGAGCCAGAAGATGGCACAGAAGGAGCCAGAAAAGTGGATG 151469 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 |||||||| || || ||||| | | ||||||||||| Sbjct 151470 CCCTCCACGCAGGCAAACGCGACCAAGCGCTCAGCAAA 151507 Score = 104 bits (114), Expect = 3e-17 Identities = 280/425 (66%), Gaps = 5/425 (1%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || |||||||| |||| |||||| || || | || | || | Sbjct 314604 CGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGACGTG 314545 Query 113657 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | |||| || ||||| | |||||| | ||| | ||| || |||||||| Sbjct 314544 AGCTTGCCGAA-GTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCGATGAA 314486 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 | ||||||||||| ||||| || | || | | |||||| |||||||| || | Sbjct 314485 GGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCACACCGTCTT 314426 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| ||| | ||||| ||||| |||| | |||| || || ||| Sbjct 314425 GTACAGGGAGCGCAGCTCATCAGGGATGTCCAG---AGCCTGGACTGACCCGTTGGCCGC 314369 Query 113836 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 |||| | ||| || || ||| || || || | || || | || || Sbjct 314368 CACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTCGTGCAGCAG 314309 Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 |||| || || || ||||| |||| || ||| | || ||||| |||| || Sbjct 314308 GTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGT 314249 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 ||| |||||||||||||| |||||||||| || |||| |||||| || ||||||||||| Sbjct 314248 GTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTGGGCATGGG 314189 Query 114016 TGCCA 114020 |||| Sbjct 314188 CGCCA 314184 >seq449 Length=50303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 172805 CGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGG 172864 || ||||||||||| ||| |||| ||||| || || || || ||| | || ||| Sbjct 35223 CGCAGAGGGAACACGCCGAAGTGGTCACGGCCCACAACGCTGAGGCCACTGATGGCCAGG 35164 Query 172865 GTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CC 172923 | ||| || || |||||||| |||| ||||||||| ||| | || | ||| | | || Sbjct 35163 GCCTTGGCAGAGTCACCCTCTGTCAGGATGAGCGTGCACATGTGCGAGT-TGCGGCCGCC 35105 Query 172924 CGCCTTGTTCGCATCGTCCAACTTGGGAATACC 172956 ||| | |||||||||||||| |||||| || || Sbjct 35104 CGCATCGTTCGCATCGTCCAGCTTGGGGATGCC 35072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334686291640