Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq7 185 9e-42 >seq7 Length=421595 Score = 185 bits (204), Expect = 9e-42 Identities = 524/806 (65%), Gaps = 18/806 (2%) Strand=Plus/Plus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 |||||||||| | | |||||| |||| ||||| || | || ||| ||| ||| Sbjct 313814 AACCTGAACAAGATCATCGACGTCAACTATTACCCTGTGAAGACCGCCGAGCGCTCCAAC 313873 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 ||| || || ||||| || ||||| |||||||| | || |||||| | || || || Sbjct 313874 CTGCGCCACCGCCCCATTGGTATCGGGGTCCAGGGCCTGGCTGACGCGTTCCTGCTGCTG 313933 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 | |||||| ||||| || ||| | |||| | |||| || || |||| Sbjct 313934 GGCATGCCCTTTGACTCGCCTGAGGCGCAGCAGCTGAACAAGGACATCTTTGAGTGCATC 313993 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC-ACGA 94967 || |||| |||| |||| ||| | | |||||| || || ||||| | | || Sbjct 313994 TACTACGCGGCCCTGAAGACGTCCATGGAGCTGGCCAA----GAAGGAGGGCCCCTATGA 314049 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | | || || || || || |||||| | | ||| ||| | ||||| |||| Sbjct 314050 GACATACCCTGGCTCCCCTGTGTCTCAGGGCGTGCTGCAGCATGACATGTGGGGCATGAA 314109 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAA 95087 | ||||| | | ||||||| | || ||||| || || | |||| ||| Sbjct 314110 GGGCTCGGACCGCTGGGACTGGGCTGGCCTGCGCGCAGACATTGCCGCCAACGGCGTGCG 314169 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| ||||||| |||| ||||||||||| || ||||| | ||||| || || ||||| Sbjct 314170 CAACTCGCTGCTGCTGGCGCCCATGCCCACCGCATCCACCTCCCAGATTCTGGGTAACAA 314229 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 ||||| || || |||| |||||||||| | ||| | || ||||| | || || || Sbjct 314230 CGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGCTGTCGGGCGAGTT 314289 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCTG-ACGTCTCTGGGTGTGTGGGGTGACA 95266 | | ||| | ||| ||||||| || | |||||| || | |||| ||||| Sbjct 314290 CACGGTCGTGAACCAGCACCTGCTGCACGACCTGTACCGC-ATGGGCCTGTGGAACCCTG 314348 Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326 || |||||||| | ||| | |||||||| || |||||| | | | || || | Sbjct 314349 AGATCAAGAACGAGCTGGTGGCGGCCAACGGGTCAGTCCAG---GCTCTGGACATCCCTG 314405 Query 95327 AGGACATCAAGGCGCTC----TACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTC 95382 | || | |||||| |||||||| |||||||||||| |||||| ||| | | Sbjct 314406 ATGAGCT----GCGCTCCCTGTACAAGACGGTGTGGGAGATCAAGCAGCGTGTGCTGGTG 314461 Query 95383 GACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATG 95442 ||| || || | || ||| |||||||| |||||| ||| Sbjct 314462 GACATGGCCGCGGATCGTGGGGCCTTCATCGACCAGAGCCAGTCGTTCAACGTGTTCATG 314521 Query 95443 GCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTC 95502 | || |||| ||| || | |||||| | || |||| ||||| ||||| ||| Sbjct 314522 CCGGACCCCAACTTCGGCAAGCTCACGTCCCTACACTTTTACGCGTGGAAGAAGGGCCTC 314581 Query 95503 AAGACCGGTATGTATTATTTGCGAAC 95528 |||||||| ||||| || |||| || Sbjct 314582 AAGACCGGCATGTACTACCTGCGCAC 314607 Score = 136 bits (150), Expect = 4e-27 Identities = 185/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| |||| ||||| |||||| | || ||||| || ||| |||| || || |||||| Sbjct 312252 GCCTCCCCCACCCTCTTCAACTCCGGCACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTG 312311 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || |||| ||| |||||| ||| || | |||| |||||||| ||||| Sbjct 312312 GTGTGTGCCAAGAACGATTCCATCGACGGCATCTATGACACGCTCAAGGAGTGTGCTGTG 312371 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || ||||| || ||||| || ||||||||| || || Sbjct 312372 ATCTCCAAGTCGGCCGGCGGCATCGGCCTCTCCATCCACAACATACGTGCCACCGGCTCG 312431 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| || ||||||||||| | || || ||||| || |||||||| Sbjct 312432 TACATCCGCGGCACCAACGGTACCTCCAACGGTGTTGTGCCCATGCTGCGCGTCTTCAAT 312491 Query 94132 AACGCGGCGCGCTACGTG 94149 || | || || || ||| Sbjct 312492 GACACTGCCCGGTATGTG 312509 Score = 113 bits (124), Expect = 4e-20 Identities = 157/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 94138 GCGC-GCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 |||| |||||||||||||||||||||| | | | ||||| | || || |||| | || Sbjct 312735 GCGCAGCTACGTGGACCAGGGTGGTGGCAAGCGCAAGGGCGCCTTTGCTATCTACATGGA 312794 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 |||||||||||| |||||| | ||| | ||||| || |||||||||||||| || Sbjct 312795 GCCCTGGCACGCAGACGTGTTTGAGTTCCTAGACCTACGCAAGAACCACGGCAAGGAGGA 312854 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 || | || | |||||||| |||| || ||| | ||||| || ||| | || || Sbjct 312855 GGCACGCGCGCGTGACCTCTTTTACGGCCTGTGGATCAATGACCTGTTCATGGAGCGTGT 312914 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGA 94355 ||||| ||| | |||| || || || ||||| || Sbjct 312915 GGAGAACAACGAGGACTGGTCCCTGTTCTGCCCCAACGA 312953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707535826680