Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq39 105 7e-18 >seq39 Length=240003 Score = 105 bits (116), Expect = 7e-18 Identities = 179/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 152928 CTCGCCCAAGAGGAAGCGCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTG 152987 ||||| || ||||| || |||| ||| ||| | | ||||||||||| |||||| Sbjct 153804 CTCGCACAGGAGGAGGCCCGCAGGCTGGGCCACAACTTTGTGGGCACCGAGCAGCTGCTG 153863 Query 152988 CTCGGGCTGGTCCACGAGGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATC 153047 || || ||| | |||| | ||| | |||||||||| ||| || | | | | | Sbjct 153864 CTGGGTCTGATTGGCGAGTCCACTGGCATCGCCGCCAAGGTGCTCAAGTCTATGGGCGTG 153923 Query 153048 AACCTGGAGGAGGTGCGTGCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGC--AC 153105 |||||| |||| | |||| ||||| ||| |||||||||||| || |||| ||| Sbjct 153924 AACCTGAAGGACGCCCGTGTGGAGGTGGAGAAGATCATCGGCCGTGG-CAGC-GGCTTTG 153981 Query 153106 CCACCGGGCACATCCCGTTCACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCG 153165 ||| | | ||||| ||||| |||| ||||||| || |||||| |||||||| | Sbjct 153982 TGGCCGTGGAGATCCCCTTCACACCCCGCGCCAAGCGTGTGCTGGAGATGTCGCTGGAGG 154041 Query 153166 AGGCGCTGCAGCTCGG 153181 |||| | ||||| || Sbjct 154042 AGGCTCGTCAGCTGGG 154057 Score = 100 bits (110), Expect = 3e-16 Identities = 91/112 (81%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 153180 GGCCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGC 153239 |||||||||||||| ||||| ||||| ||||||||| ||| ||||||||||||||||| Sbjct 154218 GGCCACAACTACATTGGCACTGAGCACATCCTGCTGGGCCTCCTCCGCGAGGGTGAGGGC 154277 Query 153240 GTGGGCTGCCAG-GTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGC 153290 || ||||||| | ||||||| || | ||||| || | ||||| ||||| Sbjct 154278 GT-GGCTGCCCGCGTGCTGGAGACTCTGGGCGCCGATCCCGCCAAGATCCGC 154328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526581726578160