Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 105 7e-18 seq28 96.9 3e-15 >seq7 Length=421595 Score = 105 bits (116), Expect = 7e-18 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATCTC 153655 || || |||||||| || || || || ||||| || || ||| |||||| ||||||||| Sbjct 313454 GCGATGGACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCG-TGTACTCCACGATCTC 313396 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| |||||| ||| || ||| |||| || ||||| || ||||| ||||| Sbjct 313395 AGTGCACAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCA 313336 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772 || ||| ||| | ||||||||||| ||| ||||||| |||| |||| ||| || Sbjct 313335 CGAGTCCTTGTACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGATGGCGAA 313276 Query 153773 CCTATGCAGGTCCTGCGCTCGCAC 153796 || ||| | |||||| ||||| Sbjct 313275 CC---ACAGCTGCTGCGCGCGCAC 313255 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 ||||||| |||| | | || |||||| | || | |||||||| || | |||| ||| Sbjct 151060 AGGAGGCTGTGGATCTGGAGCTGGAGTTCTGCACTGAGGCGCTGCCCGTGGGGCTGGTGG 151001 Query 52672 GCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 |||||||||||||| ||| || |||||||| |||| ||||||||||| ||| ||||| Sbjct 151000 GCATGAACGCGCAGCTGATGGGCCAGTACATCCAGTTCGTGGCGGATCGGCTGCTGGTG 150942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 231/348 (66%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 154104 TTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTG 154163 ||||||||||||| |||||| | | ||| | | ||| |||||||| ||| | Sbjct 312490 TTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCGTTGGTGCCGCGGATGTAC 312431 Query 154164 CTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATG 154223 |||| ||| || | | || | | | ||| ||||||||| | |||| || || Sbjct 312430 GAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCGCCGGCCGACTTGGAGATC 312371 Query 154224 GCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGC 154283 |||| || || ||||| ||||||||||||||| ||||| | | | | | Sbjct 312370 ACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAATCGTTCTTGGCACACACC 312311 Query 154284 AAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCG 154343 | ||| || || ||| || || | | || || | ||||||||||| ||| Sbjct 312310 AGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTGAAGAGGGTGGGGGAGGCG 312251 Query 154344 TGCGTAAAC-AGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATC 154402 ||||| ||| || | | ||| | | ||||||| | ||||||| | ||||| ||||| Sbjct 312250 TGCGTGAACCAGCGCTCAGA-CATGAGGTGGTACGTGTTGATGGCGGCATCGATGTCATC 312192 Query 154403 GCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 ||| ||||| | || |||||||| ||||||||||| || || || Sbjct 312191 CTTGTGGATGCCCACGGCCACGCGCATCAGCATGTGCTGGGGGCGCTC 312144 >seq28 Length=264079 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||| | |||||||| || || |||||| | || ||||||||| ||| | Sbjct 66583 GCTGAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTTCTGC 66524 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | ||| | |||||||||||||| || ||||||| | Sbjct 66523 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGAGCTC 66464 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 || || || ||||| || |||||||| |||||||| ||||| Sbjct 66463 ATCTCCCGTGACGAGGGCCTGCACACCGACTTTGCATGCCT 66423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246687091760