Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 9e-16 seq493 82.4 7e-11 >seq7 Length=421595 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/178 (74%), Gaps = 8/178 (4%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTG-TCGCAATACTGCACAATCTC 146693 ||||| || |||| ||| || || ||||||||||||| | ||| |||| ||| ||||| Sbjct 313454 GCGATGGACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCG-TGTACTCCACGATCTC 313396 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTT 146750 | ||| |||||| |||||||||| | |||| || | |||| || |||| ||| Sbjct 313395 AGTGCACAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGT---TAGACTTGCGGTT 313339 Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 ||| | ||||||||| ||||||||||| || || |||| | | ||||| |||| Sbjct 313338 GCACGAGTCCTTGTACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGATG 313281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 303/460 (66%), Gaps = 19/460 (4%) Strand=Plus/Minus Query 145755 TGTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCT 145814 ||||||||| |||||||||||||||||||| |||| ||||| ||||||||||| | Sbjct 314608 TGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGG-- 314551 Query 145815 CGACATGACCGAGT--ACGT--GGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGAT 145870 ||| ||| | | | || |||| |||| | |||| || | || |||||||| | Sbjct 314550 -GACGTGAGCTTGCCGAAGTTGGGGTCCGGC-ATGAACACGTTGAACGACTGGCTCTGGT 314493 Query 145871 CAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATG-CACTTTGATTTAATTTCCCAT 145929 | ||||| | | || || ||||||||||| | || ||| || || | | ||||| Sbjct 314492 CGATGAAGGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGA-TCTCCCAC 314434 Query 145930 GCGGTTTT--AAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACC 145987 | || || | || || | | | ||| | ||| | ||| || |||| Sbjct 314433 ACCGTCTTGTACAGGGAGCGCAGCTCATCAGGGAT-----GTCCAGAGCCTGGACTGACC 314379 Query 145988 CATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTC-TACGAGG 146046 | || | |||| | | ||| | || || | | | | || | ||| ||| Sbjct 314378 CGTTGGCCGCCACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTAC-AGG 314320 Query 146047 GCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATAC 146106 | | | || | |||||| || ||| |||||||| | || ||||| | || || Sbjct 314319 TCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAG 314260 Query 146107 ACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCG 146166 | |||| |||| | ||||| || ||||||||||||| || ||||| | || | ||| Sbjct 314259 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCG 314200 Query 146167 GTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGT 146206 || |||||| ||||| ||||| ||||| | |||||||| Sbjct 314199 GTGGGCATGGGCGCCAGCAGCAGCGAGTTGCGCACGCCGT 314160 Score = 91.5 bits (100), Expect = 1e-13 Identities = 179/260 (69%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 147220 AGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATG 147279 || |||| || ||| || || || |||| ||| |||| | | || | |||||| Sbjct 312400 AGGCCGATGCCGCCGGCCGACTTGGAGATCACAGCACACTCCTTGAGCGTGTCATAGATG 312341 Query 147280 CCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACAC 147339 ||||||||| || | |||| || |||||| || || ||| ||||| || Sbjct 312340 CCGTCGATGGAATCGTTCTTGGCACACACCAGGAAGCAGGAGGACAGCTGGGGGCGGGGG 312281 Query 147340 GTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAAC--GTGCCCAGACTCATCAATT 147397 ||||| | || || |||||| ||||||||||||| | || ||||| || | | Sbjct 312280 GTGCCGGAGTTGAAGAGGGTGGGGGAGGCGTGCGTGAACCAGCGCTCAGAC--ATGAGGT 312223 Query 147398 GATACGTTTCAATGGCGCTCATA-ACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATG 147456 | ||||| | |||||| ||| | |||||| ||| ||| ||| ||| |||||||| Sbjct 312222 GGTACGTGTTGATGGCGG-CATCGATGTCATCCTTGTGGATGCCCACGGCCACGCGCATC 312164 Query 147457 AGCATGTGCTGGGGTCGTTC 147476 |||||||||||||| || || Sbjct 312163 AGCATGTGCTGGGGGCGCTC 312144 >seq493 Length=45929 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069 |||||||||||| ||| |||||||||| | |||| |||||| | | |||||| || Sbjct 45804 CCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCTGAAGACTCGACCTCA 45745 Query 127070 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | ||| | || ||||||||||| || || || || ||||||||| Sbjct 45744 AGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATG 45700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485744455920