Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1134 567 9e-157 seq1186 383 2e-101 seq681 105 8e-18 seq893 87.8 2e-12 >seq1134 Length=9887 Score = 567 bits (628), Expect = 9e-157 Identities = 746/1028 (73%), Gaps = 12/1028 (1%) Strand=Plus/Plus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | |||||||| || | || |||||||||||||| ||||| || ||| |||||| Sbjct 6915 TATTAAAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGT 6974 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 || || | |||||||| ||||| | ||||||||| |||| ||| || || |||||| Sbjct 6975 TGGTCTTGAGCAGCCATCCACGCACGAATACCTTCATTTAATAAGATATTTTTTGTATAG 7034 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || || || ||||| ||||| || || |||| ||| || || |||||||| ||||| ||| Sbjct 7035 AATGTTTCAAACTCAGGATCTTCGGCAGCTCGGATTTCCTGAGAAACAAAATCATAGGCT 7094 Query 6437 CTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGA 6496 || ||||| | || | ||||| | ||||| | |||||||||| |||| || Sbjct 7095 CTTAGGTTTAAAGCTAAGCCAATCACCCCAATTGCACTCATCCAAAGACCAGTAACTGGT 7154 Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 || || ||||| ||||| |||| ||| || || || || || | ||| || ||||| Sbjct 7155 ACGAATAGCATGAAGAAGTGTAACCAGCGTTTGTTAGCAAAAGCTACACCGAAAATCTGT 7214 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 |||||||| | ||||| || ||||| || || || || || ||||||| || | || Sbjct 7215 GACCAGAATCTGTTAGCAGTTACCATTGAGTAAGTTTCTTCAGCTTGTGTTGGGTTGAAA 7274 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCG 6676 || |||||| || | ||||||||||| || || || || |||||||| |||||| Sbjct 7275 GCACGGAAAGTGTTAGCACCATCACCATCTTCGAATAATGTGTTTTCTACAGTTGCACCG 7334 Query 6677 TGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGG 6736 ||||| ||||| | || || ||||||| | ||| || ||||||||||| || || ||| Sbjct 7335 TGAATTGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGG 7394 Query 6737 TTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACA 6796 || || |||||||||||||| ||||| | ||| || | || ||||| || ||||||||| Sbjct 7395 TTAAGAGTCCAGTTGTGGAAACCCTGGAAGAATAGAATAAAACGGAAGATTGCTGCAACA 7454 Query 6797 CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGAC 6856 ||||| || || |||||||||| || || || | ||| || || | || ||||| Sbjct 7455 CCAAAACTTGGTGCGAAGAACCAACCTGATTGACCTAAAGGGTAAATTAAGAATACAGAT 7514 Query 6857 ACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAA----TACCGAC 6912 || || |||| ||| || | || || |||||||| ||||| ||||| | ||| || Sbjct 7515 ACGAATACAGAAATTGGTGCTGAGAAAGCGATTGCGTTGTAAGGACGTAAGTTTACAGA- 7573 Query 6913 TAGACGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAG 6972 ||| || || ||||| || || | ||||||||| || | |||| || ||||| | Sbjct 7574 ---ACGCGCAATTTCAAATTGACGTAACATGAAACCGATTAAACCAAACGCACCGTGTAA 7630 Query 6973 CGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTC 7032 || || |||||||||| || || ||||||| ||| || ||||| || || ||||| Sbjct 7631 AGCTACGAAAGGCCATAAACCACCTAGTTGGAACCAACGTGTTAAATCACCTTGCGCTTC 7690 Query 7033 TGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGC 7092 |||||||||| || ||| || || || || | | || |||||||||||| ||||| || Sbjct 7691 AGGACCCCATACAAAAAGAAGTGAGTGGCCCATACTGTTAGCAGGAGTTGAAACAGCTGC 7750 Query 7093 AGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGT 7152 || | ||| ||||| || || | || |||| || | || || |||||||| || Sbjct 7751 TGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTACCATGAAGT 7810 Query 7153 GACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAG 7212 || || ||||| || || | |||||| || | ||| | ||||||| ||||| | | Sbjct 7811 AACAAATGTTGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACATGGGAATAATAA 7870 Query 7213 AAGACCTGACCAACCAACAAAAACGAACCTATCACG-CTTAAGCCAGTCATC-GAGTACA 7270 | |||||||||||| || || ||||| | || | | ||| ||||||||| | || || Sbjct 7871 TAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGTAA-CCAGTCATCTGCGT-CA 7928 Query 7271 TCAAACCA 7278 || ||||| Sbjct 7929 TCGAACCA 7936 >seq1186 Length=9024 Score = 383 bits (424), Expect = 2e-101 Identities = 369/471 (78%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||| ||| | ||| ||||||||||||||||| ||||| || ||||| || ||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 || | ||||||||||| | ||| ||||| ||||| | |||||||||||| || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCAT-GGTGCTAACACCAAG 7707 | | ||||||||||||||||| ||||| | |||||| ||||| | || ||| ||| | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAA-ACCTAA 5616 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 ||| || ||||| || | ||||||||||| || || | ||||||||| | ||||| || Sbjct 5617 AGCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGA 5676 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 ||||||||| ||||||||||||||||| | |||||||||||| ||||| ||||| ||||| Sbjct 5677 GTTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGAT 5736 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || |||||||||||||||||||| |||||| ||| || || ||||| Sbjct 5737 GTTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGT 5796 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947 |||||||| | | |||||| ||||| | ||||| ||||| || ||| | ||||| Sbjct 5797 TGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACC 5856 Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTT 7998 |||||| |||||||| || || | ||||||||| |||||||| | ||| || Sbjct 5857 ACCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 277 bits (306), Expect = 2e-69 Identities = 283/367 (77%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 8155 ACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAA 8214 ||||| |||| |||| | |||||||||||| |||||||| ||||||| | | ||| Sbjct 8457 ACCTAAACGGAAAGATAATTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAA 8516 Query 8215 GTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGC 8274 |||| | | | | |||| |||||||||||||||| | |||||| |||||||||||||| Sbjct 8517 GTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGC 8576 Query 8275 TTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGA 8334 |||||| || || |||||||| | ||| || |||||||| | ||| | ||||||||||| Sbjct 8577 TTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGT 8636 Query 8335 GATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTC 8394 |||||||||||| || || | | ||||||| || || |||||||| || || ||||| Sbjct 8637 GATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTC 8696 Query 8395 CACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAG 8453 |||||||||||||||| ||| |||| |||||| ||| | || ||| | | || |||| Sbjct 8697 AACAGGAGGAGCAGCGATGAATGCGATGATGAATACAGA-AGTAGCTGTTAAAAGAGTAG 8755 Query 8454 GAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGT 8513 | ||||| | |||||||||||||||| || | ||| || | || || || | ||| | Sbjct 8756 GGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACT 8815 Query 8514 TACAGAA 8520 ||||| Sbjct 8816 CGCAGAA 8822 Score = 131 bits (144), Expect = 2e-25 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 8050 AGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGC 8109 ||||||| |||||||||||||||||||||||| ||| |||| || ||||||||||| ||| Sbjct 8065 AGGCATACCGTCAGAGAAAGAACCTTGACCGATAGGGTAGATGATGAATACAGCAGTTGC 8124 Query 8110 TGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCAT 8154 ||||| |||||||||||||| || ||| |||||| |||||||| Sbjct 8125 AGCAGCTACTGGAGCAGAGTAAGCAACAGCGATCCATGGACGCAT 8169 >seq681 Length=27805 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 7820 GCAACGATGTTGTAGGTCTCT----TCTTCTTGACCGAACTTATAACCATAGTTCTGGGA 7875 || ||||||||||| || ||| || |||||||||||||| |||||| ||| || Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 7876 CTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACT 7935 || ||||| |||||||| | | |||||| ||||| | ||||| |||| ||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 7936 GAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCA 7991 ||| | |||||||| || |||||||| || || | ||||||||| | | ||| || Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACGTGAGCAGCA 3264 >seq893 Length=16748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 176122 TGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCA 176181 ||||| | | ||||| ||||| ||||||| |||||||||||||||| |||||| ||| Sbjct 2647 TGGGCCGAGTCGGATTCGAACCAACGTAGGCGTAGCCAGCGGATTTACAATCCGCCCCCA 2706 Query 176182 TTAACCACTCGGACACCTACCCT 176204 |||||||||||| || | ||||| Sbjct 2707 TTAACCACTCGGGCATCGACCCT 2729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622105101973520