Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq28 125 9e-24 seq7 105 8e-18 seq449 93.3 5e-14 >seq28 Length=264079 Score = 125 bits (138), Expect = 9e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||||||||||||||| || || || ||| ||| || Sbjct 66429 GCAAAGTCGGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 66488 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | || || ||||| || |||||||| Sbjct 66489 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAAAAGAAGATG 66548 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||||||| || || || | ||| ||||| |||||| Sbjct 66549 CCCTCCACAGCAGCAAAGGCCACTAGGCGCTCAGCAAAG 66587 >seq7 Length=421595 Score = 105 bits (116), Expect = 8e-18 Identities = 290/441 (66%), Gaps = 5/441 (1%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| |||| |||||| || || | || | || | Sbjct 314604 CGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGACGTG 314545 Query 115618 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| || ||||| | |||||| | ||| | ||| || |||||||| Sbjct 314544 AGCTTGCCGAA-GTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCGATGAA 314486 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 | || |||||||| ||||| || | || | | |||||| |||||||| || | Sbjct 314485 GGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCACACCGTCTT 314426 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| ||| | ||||| ||||| |||| | |||| || || ||| Sbjct 314425 GTACAGGGAGCGCAGCTCATCAGGGATGTCCAG---AGCCTGGACTGACCCGTTGGCCGC 314369 Query 115797 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAG 115856 |||| | ||| || || ||| || || || | || || | || || Sbjct 314368 CACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTCGTGCAGCAG 314309 Query 115857 GTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGT 115916 ||||| || || || ||||| |||| || ||| | || |||||||||| || Sbjct 314308 GTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGT 314249 Query 115917 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 115976 ||| |||||||||||||| |||||||||| || |||| ||||| || ||||||||||| Sbjct 314248 GTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTGGGCATGGG 314189 Query 115977 TGCCATGAGAAGGCTGTTGCG 115997 |||| || || |||||| Sbjct 314188 CGCCAGCAGCAGCGAGTTGCG 314168 >seq449 Length=50303 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 176825 CGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGG 176884 || ||||||||||| ||| |||| ||||| || || || ||| ||| | || ||| Sbjct 35223 CGCAGAGGGAACACGCCGAAGTGGTCACGGCCCACAACGCTGAGGCCACTGATGGCCAGG 35164 Query 176885 GTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CC 176943 | ||| || || |||||||| |||| ||||||||| ||| | || | ||| | | || Sbjct 35163 GCCTTGGCAGAGTCACCCTCTGTCAGGATGAGCGTGCACATGTGCGAGT-TGCGGCCGCC 35105 Query 176944 CGCCTTGTTCGCATCGTCCAACTTGGGAATACC 176976 ||| | |||||||||||||| |||||| || || Sbjct 35104 CGCATCGTTCGCATCGTCCAGCTTGGGGATGCC 35072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487774828280