Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7 174 2e-38 seq99 95.1 2e-14 >seq7 Length=421595 Score = 174 bits (192), Expect = 2e-38 Identities = 310/448 (69%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||| ||||||||||||||||| |||||||||| |||| |||| | ||| | ||| | || Sbjct 314602 CAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGACGTGAG 314543 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| | ||||||||| | |||| | ||| | |||||||| ||||||||||| | Sbjct 314542 CTTGCCGAAGTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCGATGAAGGC 314483 Query 204004 CGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 | | ||||| |||||||| | | | |||| |||||||||||||||||| | Sbjct 314482 CCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCACACCGTCTTGTA 314423 Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCA 204122 || | | | | ||| | | ||| ||| || || |||||| | |||| Sbjct 314422 CAGGGAGCGCAGCTCATCAGGGA----TGTCCAGAGCCTGGACTGACCCGTTGGCCGCCA 314367 Query 204123 TCAGTCTCATCCTCG-TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGG 204181 ||| ||| | || | |||| ||||| ||||| | | ||| || ||| |||| Sbjct 314366 CCAG-CTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTCGTGCAGCAGG 314308 Query 204182 TGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTG 204241 || |||| | || | || || || |||||||| | || | | | |||| |||| Sbjct 314307 TGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTG 314248 Query 204242 AATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGA 204301 | || || || ||||||||| || | |||||| | |||| || ||||||||||| Sbjct 314247 TAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTGGGCATGGGC 314188 Query 204302 GCCAGGAGCAGGGAGTTGCGCACACCGT 204329 ||||| ||||| ||||||||||| |||| Sbjct 314187 GCCAGCAGCAGCGAGTTGCGCACGCCGT 314160 Score = 107 bits (118), Expect = 3e-18 Identities = 175/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 205346 TTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCC 205405 ||||| || |||||||| ||||| | |||||||| ||| ||||| |||| | |||| | Sbjct 312490 TTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCGTTGGTGCCGCGGATGTAC 312431 Query 205406 GAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATC 205465 ||||| || | | |||| ||||| ||| || ||||| | |||||| |||| Sbjct 312430 GAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCGCCGGCCGACTTGGAGATC 312371 Query 205466 TGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC--GCCAGTGTCA 205523 || ||||| | || ||| |||||||| |||||||||||| | | || || Sbjct 312370 ACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAATCGTTCTTGGCA--CACA 312313 Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583 |||| |||| || | ||||| || | |||||| | || |||||| |||||| || Sbjct 312312 CCAGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTGAAGAGGGTGGGGGAGG 312253 Query 205584 CGTGGCTGAA 205593 |||| |||| Sbjct 312252 CGTGCGTGAA 312243 Score = 105 bits (116), Expect = 1e-17 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 204845 GCCAGATTGCACACCGCGGGTCT-GTG-TGGCTCGCTCACCTCCACGATCTCGGTGCACA 204902 ||||| |||||||| || | ||| || | ||||| || ||||||||||| ||||||| Sbjct 313445 GCCAGGTTGCACACTGCAG-TCTCGTCCTCGCTCGTGTAC-TCCACGATCTCAGTGCACA 313388 Query 204903 AGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCT 204962 ||| |||||| | ||||| | ||||||||||||||||||||| || ||||||| Sbjct 313387 GGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCACGAGTCCT 313328 Query 204963 TGTACATCATGAACGGCATTCCGTTCTCCATCTG 204996 |||||| |||| |||| | || |||| ||||| Sbjct 313327 TGTACAGCATGTACGGGTTGCCCGTCTCGATCTG 313294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 159906 GGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACT 159965 ||| ||| |||| ||||||||||||| |||||| || ||||| |||||||||| Sbjct 151330 GGTGCTTGTACAGCGTGCACGCAAAGTCGGTGTGCAGGCCTTCGTCACGAGAGATGAGGA 151389 Query 159966 CGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAA 160025 |||| || | | |||||| ||||||| | ||| ||||||||| || |||| | || Sbjct 151390 CGTTTGAGAAGGAGAGGCCGGGCATGAGCAGCCGCTTTTTGAGCCAGAAGATGG-CACAG 151448 Query 160026 AAGCACCGCTAAAAAA---GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAA 160082 ||| | || | |||| ||| ||||||||| |||||||| || | | |||| ||| Sbjct 151449 AAGGA--GCCAGAAAAGTGGATGCCCTCCACGCAGGCAAACGCGACCAAGCGCTCAGCAA 151506 Query 160083 A 160083 | Sbjct 151507 A 151507 >seq99 Length=163232 Score = 95.1 bits (104), Expect = 2e-14 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| ||||||||||||||| |||||| ||||| || || ||||||| ||| ||||| | Sbjct 95331 ACAGCAGGCACGCAAAGTCGGTGTGCAGGCCCTCATCACGTGAGATGAGCTCATTGGAGA 95272 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAG 160028 | ||||||| ||||||| || ||| || ||||| |||||| |||| ||| Sbjct 95271 AGGTGAGGCCGGGCATGAGGCCTCGCTTCTTCAGCCAGTAAATGG-CGCAGAAG 95219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795130023398480