Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq28 138 1e-27 seq2016 102 8e-17 seq493 102 8e-17 seq2326 96.9 3e-15 seq533 96.9 3e-15 seq7 96.9 3e-15 seq67 95.1 1e-14 seq503 87.8 2e-12 >seq28 Length=264079 Score = 138 bits (152), Expect = 1e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| ||||||||| |||| ||||||||| | ||| ||||| |||||| Sbjct 66415 TGTACAGCAGGCATGCAAAGTCGGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGG 66474 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || |||| ||||||||||||||| || || |||||||| || |||| | ||| || Sbjct 66475 AAAAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGC 66534 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | |||||||||| |||||| || || || || ||||| |||||||| Sbjct 66535 CGGAAAAGAAGATGCCCTCCACAGCAGCAAAGGCCACTAGGCGCTC 66580 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || || | ||||| || || |||||| |||||||| || || || || |||| Sbjct 65732 CATGACACCTGACTTTTGGTACTCCCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTG 65791 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || ||| |||| | ||| | || ||||||||||||||||||||||||||| | | Sbjct 65792 CAGGGAGATGATCTCCATCCAGTCAAAGGGGTTGGCTGTGTTGTAGTGCTTGTCGTTGCC 65851 Query 132711 CAGGTCGACGAGCAGCCTG 132729 |||| | |||||||| ||| Sbjct 65852 CAGGGCCACGAGCAGGCTG 65870 >seq2016 Length=2168 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 1945 GGTATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1886 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| | |||||||| ||||||| || || | Sbjct 1885 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1826 Query 38466 GGCGGC 38471 || ||| Sbjct 1825 GGTGGC 1820 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 1564 GGTATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1505 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||||||||||||| ||||| | |||||||| ||||||| || Sbjct 1504 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCG 1452 >seq493 Length=45929 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 45575 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 45634 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| | |||||||| ||||||| || || | Sbjct 45635 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 45694 Query 38466 GGCGGC 38471 || ||| Sbjct 45695 GGTGGC 45700 >seq2326 Length=1360 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 770 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 711 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| | |||||||| ||||||| || || | Sbjct 710 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 651 Query 38466 GGCGGC 38471 || ||| Sbjct 650 GGTGGC 645 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 1139 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1080 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | |||||||| ||||||| || || | Sbjct 1079 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1020 Query 38466 GGCGGC 38471 || ||| Sbjct 1019 GGTGGC 1014 >seq533 Length=40786 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 40599 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 40540 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| | |||||||| ||||||| || || | Sbjct 40539 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 40480 Query 38466 GGCGGC 38471 || ||| Sbjct 40479 GGTGGC 40474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 40222 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 40163 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | |||||||| ||||||| || ||| | Sbjct 40162 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTTCGCTTGCGC 40103 Query 38466 GGCGG 38470 || || Sbjct 40102 GGTGG 40098 >seq7 Length=421595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 |||||| ||| | ||| ||||||||| |||| ||| ||||| | || ||||| || Sbjct 151332 TGCTTGTACAGCGTGCACGCAAAGTCGGTGTGCAGGCCTTCGTCACGAGAGATGAGGACG 151391 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAG--GCCGCGTTTTTTGAGCCAAAATATGGCGGCGA 132997 || ||| | | |||||||||||| ||||| ||||||||||| || ||||| || Sbjct 151392 TTTGAGAAGGAGAGGCCGGGCATGAGCAGCCGC--TTTTTGAGCCAGAAGATGGCACAGA 151449 Query 132998 AACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG 133057 | ||| |||||| || |||||| ||| || || || |||| |||||| | |||| Sbjct 151450 AGGAGCCAGAAAAGTGGATGCCCTCCACGCAGGCAAACGCGACCAAGCGCTCAGCAAACG 151509 Query 133058 T 133058 | Sbjct 151510 T 151510 >seq67 Length=188910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| ||||| | || ||||| |||||||| |||| ||||||| Sbjct 176633 TCCCGCCTGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCC 176574 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | ||||||||||||||| ||||| | || ||||| | |||||||| Sbjct 176573 TGGCCGACTACAACATCCAGAAGGAGTCCACACTGCACCTCGTGCTGCG 176525 >seq503 Length=44646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| |||| ||| Sbjct 44511 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 44570 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | |||||||| ||||||| || || | Sbjct 44571 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 44630 Query 38466 GGCGGC 38471 || ||| Sbjct 44631 GGTGGC 44636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156963278720