Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq408 127 3e-24 seq78 91.5 2e-13 >seq408 Length=55535 Score = 127 bits (140), Expect = 3e-24 Identities = 283/421 (67%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || || ||||| | || || || || || | || || | | || Sbjct 33805 CGTAGAGAAGATCTGCTCCTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCACCGT 33746 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | |||||| ||| || | || || ||||| || | |||||||| || | || Sbjct 33745 CATGACCCCACCCGCAGTCTCAATCCCCAGGGACAGGGGGGCCACGTCCAGCAGCAGCAA 33686 Query 6988 GTCTTGAACA-GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 ||| || ||| | ||| || ||||||| | ||| ||||| ||||| | || || | Sbjct 33685 GTCCTGCACATGGCTCGAGCCAG-CACCCGTGAGGATCGCGGCCTGGACGGCTGCACCAT 33627 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || ||||||||||| ||||| || | || ||||| || || || || || | ||| Sbjct 33626 ACGCCACCGCCTCATCTGGGTTGATGCTCTTGTTCAGCTCCTTGCCATTGAAGAAGTCCT 33567 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 | ||| || || | || ||||| || || || |||||||||| || | || | | Sbjct 33566 GCAGCATCTGCTGCACCTTGGGGATGCGCGTGGAGCCACCGACCAGCACCACGTCGTGGA 33507 Query 7167 CTTTCGA---TTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | || || || ||||| | || ||| || || ||||| |||| || | Sbjct 33506 ---TGGAGCCCTTGTCCATCTTGGCATCAGACAGTACCTTCTCCACAGGGCCCATGCACT 33450 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 | | ||||||||||| ||| ||||| || |||||||| || || || | || ||| | Sbjct 33449 TCCTAAACAAGTCCATGTTCAGCTCCTCGAAGCGTGCACGCGTGATTGACGCATTGAAGT 33390 Query 7284 C 7284 | Sbjct 33389 C 33389 Score = 125 bits (138), Expect = 9e-24 Identities = 141/188 (75%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | || || || ||||| |||||||| |||||||| |||||||||||||| | Sbjct 31820 AACTTGCGGCCAATGAGGCGCTTGGCATCAAAGACTGTGTTCTTGGGGTTCATGGCCACT 31761 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| || || || | | || ||||| || || || || Sbjct 31760 TGGTTCTTGGCAGCATCGCCGATGAGGCGCTC---AGTGTCTGTAAAGGCCACATAGGAG 31704 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || || ||||| || || || || || || ||||| || ||||| ||| Sbjct 31703 GGCGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTCGGTCATTCTGCCACACG 31644 Query 8108 CCGACGCA 8115 || ||||| Sbjct 31643 CCCACGCA 31636 Score = 100 bits (110), Expect = 4e-16 Identities = 247/376 (66%), Gaps = 9/376 (2%) Strand=Plus/Minus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 || || | ||| ||||| |||||||| ||||| || || | || || || || || || Sbjct 33071 GATGACAGCGTGCGCTTGGCGCGCTCGCACGCAGTACGCAGCCGCCGCAGCGCGCGGGGC 33012 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 | || | || ||||| | || || ||||| | ||||||| | | Sbjct 33011 GAGTCAGACAGGTCCTTCTTGTACCGCCGCTTGAACTCCTGGCAGAAGTGGTCCACCATG 32952 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 | ||| || || || |||||||||| ||| || || || || || || ||||| |||||| Sbjct 32951 CGCGAGTCAAAGTCCTCACCACCCAGGTGGGTGTCACCTGCTGTGGCCTTGACCTCAAAG 32892 Query 7511 ATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG 7570 || || | ||||| | | || |||||||| || ||||||||||| || || ||| Sbjct 32891 ATGCCCTCATCAATAGACAGAAGGGAGACATCAAAGGTGCCACCACCCAGATCGAAGATG 32832 Query 7571 AGTACGTT---------CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || || | | || | | | ||||| || |||||||||||||| || Sbjct 32831 AGCACATTGCGCTCATGCTTCACGCCCGCCTGCTTCTTGTCCAGACCGTACGCGATGGCT 32772 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || || || || | |||||| || || | | || || Sbjct 32771 GCAGCAGTGGGCTCGTTGATGATGCGCAGCACCTCCAGGCCTGCGATCGCGCCGGCGTCC 32712 Query 7682 TTCGTCGCTTGTCGTT 7697 || || || ||| ||| Sbjct 32711 TTGGTGGCCTGTGGTT 32696 >seq78 Length=180426 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | || || ||||| | || || || || || | || || | | |||| Sbjct 21643 GTGGAGAACACCTGCTCCTTCTTGGTGGGGATGGTGGTGTTACGGGGGATGAGGGTGGTC 21702 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | ||| ||| || || || || || ||||| || || ||||||| || | || | Sbjct 21703 ATCACACCGCCCGCCGTCTCCAGGCCCAGGGACAGGGGGGTGACGTCCAGCAGCAGCAAG 21762 Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || || || || || || ||||| | |||||||| || || | || ||||| Sbjct 21763 TCCTGCACCTTCTCACCGCCCTCGCCCGTCAGAATGGCGGCCTGCACGGCGGCACCGTAC 21822 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 ||||| ||||| ||||||||||| | || ||||| || || ||||| || Sbjct 21823 GCGACGGCCTCGTCGGGGTTAATGCTCTTGTTCAGCTCCTTGCCGTTGAA 21872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635112690107720