Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28 134 2e-26 seq7 125 9e-24 seq449 114 2e-20 seq99 109 7e-19 >seq28 Length=264079 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||||||||| || | || ||||| ||| ||||| |||||||| || || ||||| Sbjct 66587 CTTTGCTGAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTT 66528 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | || | |||||||||||||| || |||||||| || || ||| |||||||| Sbjct 66527 CTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGA 66468 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| ||||||||||| || ||| || ||||| Sbjct 66467 GCTCATCTCCCGTGACGAGGGCCTGCACACCGACTTTGC 66429 >seq7 Length=421595 Score = 125 bits (138), Expect = 9e-24 Identities = 175/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 |||||| |||||||| ||||| || | | ||||| || | ||||| || ||| Sbjct 151588 CTCTTTCGTGCCATCCACACAGTGCCCACTGTGGGCAAGAAGGCCAACTGGGCAATCAAG 151529 Query 102150 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 102209 ||| | | | | | ||| | ||||||||||| | |||| ||||| || || ||| Sbjct 151528 TGGATC--TCCTCGGAC-CGTACGTTTGCTGAGCGCTTGGTCGCGTTTGCCTGCGTGGAG 151472 Query 102210 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 102269 || ||| ||| ||||| |||||||| || || | |||||||| ||||| |||||| Sbjct 151471 GGCATCCACTTTTCTGGCTCCTTCTGTGCCATCTTCTGGCTCAAAAAGCGGCTGCTCATG 151412 Query 102270 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTT 102329 || || |||| |||||| |||| || |||||||||||||| || || ||| || ||| Sbjct 151411 CCCGGCCTCTCCTTCTCAAACGTCCTCATCTCTCGTGACGAAGGCCTGCACACCGACTTT 151352 Query 102330 GCG 102332 ||| Sbjct 151351 GCG 151349 >seq449 Length=50303 Score = 114 bits (126), Expect = 2e-20 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 |||||||| |||||| || ||||| ||||||||||| | ||| | || || ||||| Sbjct 36772 GCATCCTTGCCACCCTGCAGCCGCGTGCCAAACTGACCTGAGGGCACCAGCAGGTTGATG 36713 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 ||||| || |||| |||| | |||| |||| || ||| | | || || | || Sbjct 36712 TTGTTGGAGCCCACAAAGTCCTGTGCCAGGTTGATGATGGTGGCGGACAGGGACGCCTCG 36653 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 |||||||||||||| | ||| | ||| | | |||| |||| |||| || || || Sbjct 36652 CCGTGGTGGTACGCCGAGTGCTCGGACACATAACCTGCCAGCTGCACCACCTTGATGTCC 36593 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 |||||| || | ||| |||| | | | | |||||| || |||||| ||||| Sbjct 36592 GACTTGAGGTTGCGCTTGAAGCATGAGAATAGGATCTTGCGCTGGCCAGGCTTCAGACCG 36533 Query 176258 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 176317 ||| ||||| | ||| || |||| || ||| || |||| || ||| |||||| Sbjct 36532 TCCACCATGCTGGGGATGGATCGCTCCAGGTCAGCGCGCGAGAAGAGGATGAGCTCCTTG 36473 Query 176318 T 176318 | Sbjct 36472 T 36472 >seq99 Length=163232 Score = 109 bits (120), Expect = 7e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || ||||||||||| ||||| ||||| ||||||||||| |||||||| || ||| |||| Sbjct 95214 GGCTCCTTCTGCGCCATTTACTGGCTGAAGAAGCGAGGCCTCATGCCCGGCCTCACCTTC 95273 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||||| ||||| ||||| ||||| ||||| || ||| || |||||| Sbjct 95274 TCCAATGAGCTCATCTCACGTGATGAGGGCCTGCACACCGACTTTGCG 95321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722745743760