Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7 116 4e-21 seq449 95.1 1e-14 seq28 93.3 5e-14 >seq7 Length=421595 Score = 116 bits (128), Expect = 4e-21 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAG--TC 119565 || || ||||| || ||||||||||| | || |||| | || || |||||||| | Sbjct 151362 TGCAGGCCTTCGTCACGAGAGATGAGGACGTTTGAGAAGGAGAGGCCGGGCATGAGCAGC 151421 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 | |||| || ||||| ||||||||||| || ||||||||| |||||||||||| | Sbjct 151422 CGCTTT--TTGAGCCAGAAGATGGCACAGAAGGAGCCAGAAAAGTGGATGCCCTCCACGC 151479 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCC 119685 |||| || |||| | ||||||||||| | || | | || |||||||| |||| Sbjct 151480 AGGCAAACGCGACCAAGCGCTCAGCAAACGTACGGTCCGAGGAGATCCACTTGATTGCCC 151539 Query 119686 AGTTGGCCTT 119695 |||||||||| Sbjct 151540 AGTTGGCCTT 151549 >seq449 Length=50303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 186/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||||||||||||||| || || || ||||| ||||| | ||| | || || |||||| Sbjct 36772 GCATCCTTGCCACCCTGCAGCCGCGTGCCAAACTGACCTGAGGGCACCAGCAGGTTGATG 36713 Query 167596 TTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCG 167655 || || || ||| | | || | |||| |||| ||| || | | ||||| | ||| Sbjct 36712 TTGTTGGAGCCCACAAAGTCCTGTGCCAGGTTGATGATGGTGGCGGACAGGGACGCCTCG 36653 Query 167656 CCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCA 167715 ||||||||||| || | || | |||||| |||||| ||| | ||||| || || Sbjct 36652 CCGTGGTGGTACGCCGAGTGCTCGGACACATAACCTGCCAGCTGCACCACCTTGATGTCC 36593 Query 167716 TCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCA 167775 ||||| || | ||| ||||| | | | |||||| || ||| || ||||| Sbjct 36592 GACTTGAGGTTGCGCTTGAAGCATGAGAATAGGATCTTGCGCTGGCCAGGCTTCAGACCG 36533 Query 167776 TCTGCCACGTGAGCAATTGAGCGCTTCAGATCAGC 167810 || ||| | | || || |||| ||| ||||| Sbjct 36532 TCCACCATGCTGGGGATGGATCGCTCCAGGTCAGC 36498 >seq28 Length=264079 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||| || || |||||||| || Sbjct 66441 TGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGGCCA 66500 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || ||||||||||||||||||||| Sbjct 66501 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAAAAGAAGATGCCCTCCACAGCA 66560 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 || || || | ||| ||||||||||| Sbjct 66561 GCAAAGGCCACTAGGCGCTCAGCAAA 66586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957351547400