Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7 100 3e-16 seq449 95.1 1e-14 >seq7 Length=421595 Score = 100 bits (110), Expect = 3e-16 Identities = 240/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 ||||| || || ||| | || || ||||| ||||| || | || ||| | || ||| Sbjct 312508 ACATACCGGGCAGTGTCATTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCG 312449 Query 107012 TTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 107069 || || || || || ||||| |||| | | | |||||| | || || | Sbjct 312448 TTGGTGCCGCGGATGTACGAGCCGG--TGGCACGTATGTTGTGGATGGAGAGGCCGATGC 312391 Query 107070 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129 | || ||| |||| ||||| ||||||||| | || || ||||||| |||| ||| | Sbjct 312390 CGCCGGCCGACTTGGAGATCACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGG 312331 Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 107189 | || | |||| | |||||||| ||||| ||| || | || || || | | Sbjct 312330 AATCGTTCTTGGCACACACCAGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGT 312271 Query 107190 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCA 107249 |||||||||| || | ||||| ||||| | | ||||| || ||| || | | Sbjct 312270 TGAAGAGGGTGGGGGAGGCGTGCGTGAACCAGCGCTCAGACATGAGGTGGTACGTGTTGA 312211 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 | | | ||| ||||| ||| ||||||||| | |||||| ||||| | ||||| |||| Sbjct 312210 TGGCGGCATCGATGTCATCCTTGTGGATGCCCACGGCCACGCGCATCAGCATGTGCTGGG 312151 Query 107310 G 107310 | Sbjct 312150 G 312150 >seq449 Length=50303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526 ||||||||| |||||| || ||||| ||||| ||||| | || | || ||||| || Sbjct 36773 AGCATCCTTGCCACCCTGCAGCCGCGTGCCAAACTGACCTGAGGGCACCAGCAGGTTGAT 36714 Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586 |||||| || ||| |||| | ||||| || | || ||| | | | ||| | || Sbjct 36713 GTTGTTGGAGCCCACAAAGTCCTGTGCCAGGTTGATGATGGTGGCGGACAGGGACGCCTC 36654 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 || ||||||||||| || | || | ||||| | ||||| || ||||||| || || Sbjct 36653 GCCGTGGTGGTACGCCGAGTGCTCGGACACATAACCTGCCAGCTGCACCACCTTGATGTC 36594 Query 168647 ATCCTTGAGATTCTTATGGAAGCA--AGCATA-CATCACTTTCCTCTGTGAAGGCTTGAG 168703 |||||| || | |||||| || ||| ||| || | ||| |||||| || Sbjct 36593 CGACTTGAGGTTGCGCTTGAAGCATGAGAATAGGATC---TTGCGCTGGCCAGGCTTCAG 36537 Query 168704 ACCATCCGCCATATGGGCAATAGAGCGCTTCAAGTCTGC 168742 ||| ||| |||| || || || |||| || ||| || Sbjct 36536 ACCGTCCACCATGCTGGGGATGGATCGCTCCAGGTCAGC 36498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962119732920