Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1134 553 2e-152 seq1186 352 3e-92 seq681 114 2e-20 >seq1134 Length=9887 Score = 553 bits (612), Expect = 2e-152 Identities = 728/1005 (72%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 ||||||||| | | ||||| || || || || || ||||| || || || || || Sbjct 7921 GATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTA-TTATTATT 7863 Query 181496 CCCAC-TGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTG 181554 |||| |||||| ||||| | || || ||| | ||||| || || |||||||| || || Sbjct 7862 CCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATG 7803 Query 181555 GTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGT 181614 |||||| || || || || |||| ||| | || ||| ||| ||| | ||||| ||||| Sbjct 7802 GTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 7743 Query 181615 GTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCA 181674 ||||| |||||| || |||||| || || |||||| | | |||||||||||||| || Sbjct 7742 TTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCA 7683 Query 181675 GGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 181734 || ||||| || ||| ||||||| || || | ||| |||| || || | ||||| Sbjct 7682 AGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGG 7623 Query 181735 AGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTC---TAATCGG 181791 || || | | | |||||||| ||| | | ||||||||| |||| ||| ||| | Sbjct 7622 TGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGCGCGTTCTGTAAACTT 7563 Query 181792 AATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATT 181851 | || || ||||| || || ||||| || | || ||| |||||||||| |||||||| Sbjct 7562 A---CGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTATT 7506 Query 181852 TCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGC 181911 | || || ||| | || ||||| |||||||||| || || ||||| ||||| || || Sbjct 7505 CTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGC 7446 Query 181912 GATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCA 181971 || ||||| || |||| ||| ||||||| || || || ||||| || || || ||||| Sbjct 7445 AATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCA 7386 Query 181972 TATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGAC 182031 |||||||||||||||||| | | |||| || ||| | | |||||||||||||| || Sbjct 7385 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAAC 7326 Query 182032 CGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTC 182091 || || || || | | |||| ||||| || || |||||| || ||| | | Sbjct 7325 TGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACCC 7266 Query 182092 AACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTT 182151 ||| |||| |||||||| || |||||||| || || ||| | |||||||| ||||| || Sbjct 7265 AACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTTT 7206 Query 182152 CGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTAT 182211 |||| | || ||| || || | ||||| || ||||| ||||| || || || |||| Sbjct 7205 CGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTAC 7146 Query 182212 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 182271 |||||||||| ||| | || || | ||||| | ||| | ||||| | || ||||| Sbjct 7145 TGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGA 7086 Query 182272 CTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAA 182331 ||||| || || |||||| |||| | ||||| || ||||| || || ||||| ||||| Sbjct 7085 TTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAA 7026 Query 182332 GAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGA 182391 || || | || ||||||||| | ||||| ||| | || | || |||||||| || Sbjct 7025 AAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGA 6966 Query 182392 GAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || || |||||||| ||||||||||| | |||||||| || Sbjct 6965 ACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 6921 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 141253 ATTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAA 141312 |||| |||||||||||| || ||||| || ||||||| || ||||||||||||||| Sbjct 6539 ATTCTTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGTAGGTTCAAG 6480 Query 141313 TCCTACCTGGGGAG 141326 |||||||||||||| Sbjct 6479 TCCTACCTGGGGAG 6466 >seq1186 Length=9024 Score = 352 bits (390), Expect = 3e-92 Identities = 360/470 (77%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 180270 AACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTG 180329 || ||| | |||||||| ||||||||| | || || || ||||| || || |||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 180330 TTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACT 180389 ||||| || |||||||||||| | || || ||||| | | |||||||| ||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 180390 GAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCT 180449 || || ||| ||||||||||| |||||||||||||| || ||||||||||| ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 180450 GCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCA 180509 ||||| || ||||| |||||| | |||||||| || || || ||||||||||| |||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 180510 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTA 180569 | ||||||||| | || || ||||| || || | || ||||| || || | || || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629 || ||||| |||||| | ||||| ||||||||||||||||| | | || |||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTT 180689 |||||||| | ||||||||||| ||| | ||||||| ||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 180690 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 ||||| || ||||| |||||||||||||| || ||| | || ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 295 bits (326), Expect = 8e-75 Identities = 287/367 (78%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 |||||||||||| | || ||||| | ||||| | || ||||||||||||| ||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || ||||| || |||| ||| |||| |||||| |||| |||||||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 ||||| ||||||||||| |||||||| || || |||||||| | | || |||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||| ||||||| ||| | ||| | || ||||| || ||| | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| || || |||||||||||| | || ||||||||||||| |||| | |||| Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | ||||||| | | || |||| |||||||| |||||||||||| | |||| || Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 180107 CTTGGGT 180113 || ||| Sbjct 8463 TTTAGGT 8457 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 180114 ATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 180173 ||||| || |||||| || || || ||||||||||| ||||| ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 180174 CTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 || |||| ||| ||||||||||||| |||||||||| ||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 || ||| | | ||||||||| | || || || ||||| ||||| |||||| | ||||| | Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 || ||||||||||| | || || ||||| | | |||||||| ||||| | || || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGA----AGAGACCTACAACATCGTTGC 180448 ||| ||||||||||| |||||||| || ||| || ||||||||||| || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610377473311320