Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1134 500 1e-136 seq1186 340 2e-88 >seq1134 Length=9887 Score = 500 bits (554), Expect = 1e-136 Identities = 740/1047 (71%), Gaps = 31/1047 (3%) Strand=Plus/Minus Query 170525 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTC 170584 |||||| |||| || ||||||||| ||| ||||| |||||| |||| ||||| Sbjct 7937 TTGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 7878 Query 170585 TGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTAC 170644 ||| | ||| | | || ||||| ||| | || | ||||||||||| || || || Sbjct 7877 AGGTTTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 170645 CTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTT 170704 || ||||| |||||||| ||||||||| | || | || || | || || |||||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 170705 CCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 170764 | |||||||||| ||||| || |||| || ||||| || ||||| || | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 170765 GGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTT 170824 ||| |||||||| |||||| || |||||||| ||||| || ||||||||| || Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 170825 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGC 170884 ||||| ||||| || | ||||| | || ||||||||| | | |||||||| || || Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 170885 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 170944 | |||| | | | |||||||||||| |||| ||||| || || | || || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 170945 CACTAGCATCT---TTC-TGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCAT 171000 | | |||| ||| | || || || ||||||| ||||||||||||||||| Sbjct 7517 C----GTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAA 7462 Query 171001 CATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTA 171060 || ||||| |||||||| || |||| ||| ||||| | || |||||||||||| | Sbjct 7461 GTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGA 7402 Query 171061 CATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTG 171120 | | || ||||| ||||||||||||||||| || | |||||| || |||||||||| Sbjct 7401 CTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 7342 Query 171121 CCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATA 171180 | ||||| |||||||| || | |||||||| | ||||| | | || || || Sbjct 7341 CAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGA------TGGTGATGGTGCTA 7288 Query 171181 ATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACA 171240 | || |||||||| || | || ||||| | |||||||||||| Sbjct 7287 A---------------CACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACT 7243 Query 171241 GTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAA 171300 ||| | || || |||||||||||||||||||| || ||| | ||||| |||||||| Sbjct 7242 CAATGGTAACTGCTAACAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAAC 7183 Query 171301 GATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAG 171360 | | ||||||||| | ||| | ||||| || || | ||| | |||| | || | Sbjct 7182 GCTGGTTACACTTCTTCATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTG 7123 Query 171361 GTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAG 171420 | | | || |||| | ||||| ||||| || |||||||| ||||| || || ||| Sbjct 7122 GGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAG 7063 Query 171421 CAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAAGGT 171479 | || ||||| || ||||| || || ||||| || || ||||| ||| || ||||||||| Sbjct 7062 CTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAAAAATAT-CTTATTAAATGAAGGT 7004 Query 171480 ATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAA 171539 || | || |||||| | | ||||||||||| || || |||||||| |||||| Sbjct 7003 ATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAA 6944 Query 171540 GTGTTACCAAGAGGTAACGCACTTTAA 171566 || ||||| | |||||||| |||||| Sbjct 6943 GTATTACCTCGTGGTAACGCTCTTTAA 6917 >seq1186 Length=9024 Score = 340 bits (376), Expect = 2e-88 Identities = 353/463 (76%), Gaps = 0/463 (0%) Strand=Plus/Minus Query 169931 TAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAG 169990 ||||||| || ||||||||| ||| || || || | || || || || |||||||||| Sbjct 5900 TAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAG 5841 Query 169991 CAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCAC 170050 | ||||| |||||| | || ||||| ||| ||||| | |||||||| || | || ||| Sbjct 5840 CTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAG 5781 Query 170051 AGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACG 170110 ||| |||||| |||||||| |||||||||||||| |||||||| ||||| ||||||| Sbjct 5780 CTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACG 5721 Query 170111 GTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACT 170170 |||||||||||||| | |||||||| || ||||||||||||||||| | |||||| Sbjct 5720 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACT 5661 Query 170171 TCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAA 170230 ||||| |||| | || || ||||||||| | ||||| || || | ||| | | || | Sbjct 5660 TCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTA 5601 Query 170231 TGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAA 170290 |||| |||||||| || || |||||||| ||||| |||||||| || || | || Sbjct 5600 TGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTG 5541 Query 170291 TCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATG 170350 | | || |||| ||| | | ||| | || ||||| |||||||| || ||||||| Sbjct 5540 TATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATG 5481 Query 170351 AAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 || | || || ||||||||||| |||||| |||| |||| ||| Sbjct 5480 AACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 219 bits (242), Expect = 5e-52 Identities = 272/367 (74%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 || ||||||||| | || || || | ||| | | || | |||||||| |||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 169462 ATGATTCCATGCT-TACTCACAGCAGCAGCATGT-TTCATCGTTGCATTCATTGCAGCAC 169519 ||||| || | || | | ||||| | | ||| |||||| | |||||||| || || | Sbjct 8762 ATGATCCC-TACTCTTTTAACAGCTACTTC-TGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 169520 CTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACA 169579 ||||||| || ||||| || ||| | || ||||| | ||||| || || || ||||||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 169580 ACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAA 169639 |||||||| ||||||| ||| | || |||| ||||| ||||| ||||||||||||||| Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 169640 TCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAA 169699 | ||||||||||| || |||| || ||||| || || ||||||||||| || || | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 169700 TCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACA 169759 | | ||||||| | | ||||||| |||||||| | |||||||| |||| | | Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 169760 GATTAGG 169766 | ||||| Sbjct 8464 GTTTAGG 8458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579194460674720