Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1134 526 2e-144 seq1186 392 4e-104 seq681 100 3e-16 >seq1134 Length=9887 Score = 526 bits (582), Expect = 2e-144 Identities = 731/1021 (72%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 165191 TGGTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 165250 |||||||||| | ||||||||| | | ||| |||||||| || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 165251 GGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTAC 165309 || || || || |||||| |||||| |||| | || |||||| | ||||| || || Sbjct 7876 GGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 165310 TTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTT 165369 || | || ||||| || || || || |||| ||| || | || ||| ||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 165370 TCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTG 165429 | || || || ||||| ||||| || || |||||| || || ||||| || | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 165430 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 165489 ||||||||| || ||||| ||||| | ||| ||||||| || || | ||| |||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 165490 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGC 165549 || || | ||||| || || | | |||| ||||||||| | ||||| |||||| | || Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 165550 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 165605 ||| || ||| | ||||| ||||| || || || ||||| | || || ||| Sbjct 7577 GCGT----TCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTG 7522 Query 165606 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 165665 | || || || || | || |||||| | |||||||| ||||||| ||||| ||| Sbjct 7521 TATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAA 7462 Query 165666 CTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGA 165725 ||| || || |||||||||||| | || |||| ||| | || || ||||| ||||||| Sbjct 7461 GTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGA 7402 Query 165726 CCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTG 165785 | | || || || || |||||||||||||| ||| | | |||| ||| || | | || Sbjct 7401 CTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 7342 Query 165786 CCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTT 165845 | || || |||| || ||||| || || | | |||||||||| | ||| || |||| Sbjct 7341 CAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTT 7282 Query 165846 TCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTT 165905 || || || || | || |||| |||||||| ||||||||||| ||||| ||| | | Sbjct 7281 TCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGAT 7222 Query 165906 TCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGC 165965 ||||||| ||||| |||||| | || ||| ||| || | ||||| || ||||| |||| Sbjct 7221 TCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGC 7162 Query 165966 TGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCA 166025 | || || || |||| |||||||||| ||| | || || | ||||| | ||| | | Sbjct 7161 TATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAA 7102 Query 166026 ACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTG 166085 |||| | || ||||| ||||| || || || ||| |||| || ||||| || ||||||| Sbjct 7101 ACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTG 7042 Query 166086 AAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAG 166145 |||| ||||| || ||||| || | || ||||||||| ||||||| ||| |||| | Sbjct 7041 AAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTC 6982 Query 166146 TCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGC 166205 || ||||| || || || || |||||||||||||| | ||| | |||||||| | Sbjct 6981 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 6922 Query 166206 T 166206 | Sbjct 6921 T 6921 >seq1186 Length=9024 Score = 392 bits (434), Expect = 4e-104 Identities = 369/470 (79%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 164307 AACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTG 164366 || ||| | |||||||| ||||| ||| | || |||||||| |||||||| ||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 164367 TTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACT 164426 ||| || ||||||||||| | || |||||||| | | |||||||| || |||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 164427 GAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCC 164486 || || ||| |||||||||||| ||||||||||||||||| |||||||| || || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 164487 GCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 164546 || |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 164547 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTT 164606 || ||||||||| | ||||| ||||| ||||| | || ||||| || || | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 164607 TCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG 164666 || || ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 164667 GGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTT 164726 |||||||| | ||||||||||| ||| | ||||||| ||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 164727 ATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 ||||| || ||||||||||||||||||||||| || | ||| ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 280 bits (310), Expect = 2e-70 Identities = 284/367 (77%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||||| ||| | ||||| || | ||||| | || | ||||||||||| ||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| || | |||| || ||||| |||||| |||| ||| |||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAA 163963 ||||| |||||||||||||| ||||| || ||| | ||||| | | || |||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 163964 CATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCAT 164023 ||||||| ||||||| ||| | || | || || || || ||| | ||||||||||| || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 164024 TTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGT 164083 ||||||||| || || ||||| || ||| | |||||||||||||||| |||| | |||| Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 164084 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCG 164143 | ||||||| | | ||||||| |||||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 164144 TCTTGGT 164150 | | ||| Sbjct 8463 TTTAGGT 8457 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 164151 ATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTC 164210 |||||||| ||||| ||||||||||||||| || || || || ||| | || || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 164211 CTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCC 164254 | |||| ||| ||||||||||||| |||||||||| ||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 100 bits (110), Expect = 3e-16 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 164314 TGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTG 164373 || ||| | | ||||| ||| | || |||||||| || || || ||||| | ||| || Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 164374 CAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCC 164433 || |||||||||| | || |||||||| | | |||||||| || || | || || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 164434 AGAACTATGGTTACAAGTTTGGTCAAGAAGA----AGAAACATACAACATTGTTGC 164485 ||| |||||||||||| |||||||| || |||||| |||||||| || || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556907166368520