Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq1186 318 7e-82 seq681 114 1e-20 >seq1186 Length=9024 Score = 318 bits (352), Expect = 7e-82 Identities = 351/466 (75%), Gaps = 1/466 (0%) Strand=Plus/Minus Query 169018 TCTTA-TGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCT 169076 ||||| |||| || ||||| ||| ||| || || ||| | || ||||| || |||||| Sbjct 5903 TCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCT 5844 Query 169077 CCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAAT 169136 | || ||||| |||||| | ||||| |||||| ||||| | || || ||||| | |||| Sbjct 5843 CAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAAT 5784 Query 169137 CTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCAC 169196 | ||| |||||||||||||||||||||||||||||| || || || || || |||| Sbjct 5783 CAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCAC 5724 Query 169197 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTC 169256 | || ||||| ||| | ||||||||||| || || ||||||||||| | | | Sbjct 5723 ACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTAC 5664 Query 169257 ACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTA 169316 |||||||| |||| | | |||||||||||| | ||||| || || | ||| | | | Sbjct 5663 ACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAA 5604 Query 169317 CAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTA 169376 | ||||| |||||||| ||||| || ||||| ||||| ||||||||||| | | ||| Sbjct 5603 CTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTC 5544 Query 169377 AGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGC 169436 | | || |||| |||| | | ||| | || ||| | |||||||| ||||||| Sbjct 5543 GTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGC 5484 Query 169437 ATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||| |||||||||||||||||||| ||||||||||| |||| ||| Sbjct 5483 ATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 212 bits (234), Expect = 7e-50 Identities = 271/368 (74%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||||| ||| | || ||| | ||| | | || | |||||||||||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| | | |||||||| | | ||| ||||| | ||||| || ||||| || Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTC-TGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 ||||| || ||||| || ||| | || || || | ||| | || | || || ||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||||||| | ||||| ||| | || | || ||||| |||||| |||||||||||||||| Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||||| | | || ||||||||||| || |||||||||||||| || | | Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 168790 CTTCCACTTCCTAATCGGAATCT-CTGCCTACATGGGTAGACAGTGGGAATTATCATACA 168848 | ||||||| | | || |||| ||| |||||||| | ||||||||||||| | | Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGT-TACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 168849 GACTAGGT 168856 | ||||| Sbjct 8464 GTTTAGGT 8457 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 168857 ATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTC 168916 ||| | || |||||| ||||||||| || || |||||| |||| ||| ||| |||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 168917 CTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 | | ||||| | ||||| |||||||||||||| ||||||||| |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGG 8060 >seq681 Length=27805 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 ||||| ||| ||| || || ||| | |||||||| || ||||||| ||| |||| ||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 ||| | ||||| |||||| ||||| | || || ||||| | ||||| ||| |||| Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 169151 TACAAGTTCGGTCAAGAAGA----AGAAACCTATAATATTGTTGCA 169192 ||||||||||||||||| || |||||| || || || || ||| Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564423728367840