Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1134 495 4e-135 seq1186 354 1e-92 seq681 118 1e-21 >seq1134 Length=9887 Score = 495 bits (548), Expect = 4e-135 Identities = 737/1044 (71%), Gaps = 25/1044 (2%) Strand=Plus/Minus Query 172947 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 173006 |||||| |||| || ||||||||| ||| |||||||||||| | || ||||| Sbjct 7937 TTGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 7878 Query 173007 TGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTAC 173066 ||| | ||| | | || ||||||||| || | | ||||||||||| || || || Sbjct 7877 AGGTTTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 173067 CTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTT 173126 || ||||| |||||||| ||||||||| | ||| |||| || | ||||| ||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 173127 TTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 173186 ||||||||||| || || || |||| || ||||| || ||||| || | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 173187 GGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTT 173246 ||| |||||||| |||||| || ||||||||| ||||| || || ||||| || Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 173247 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGC 173306 ||||| ||||| || | ||||| | || ||||||||| | ||||| ||||| || || Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 173307 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 173366 | |||| | | | |||||||||||| |||| ||||| || || | || || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 173367 CACTAGC-ATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | || | | || ||||| ||||| |||| || |||||||||||||||| | Sbjct 7517 C-GTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTT 7459 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | ||||| ||||||||||| |||| ||| ||||| | || |||||||||||| || Sbjct 7458 TTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTC 7399 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 | || ||||| ||||||||||||||||| || | |||||| || ||| ||||||| | Sbjct 7398 TTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAA 7339 Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605 |||| |||||||| || | |||||||| | |||| || ||| ||| Sbjct 7338 TTCACGGTGCAACTGTAGAAAACACATTATTCGAAG------------ATGGTGATGGT- 7292 Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665 | | |||||| | || || | || ||||| | ||||||||||| | Sbjct 7291 --------GCTAACACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAA 7240 Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725 || | || || |||||||||||||||||||| || ||| | || ||| | |||||| | | Sbjct 7239 TGGTAACTGCTAACAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCT 7180 Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785 ||||||||| ||||| | |||||||| || | ||| | |||| | || || Sbjct 7179 GGTTACACTTCTTCATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGG 7120 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | | || | || | ||||| ||||| || || ||||| ||||| || || |||| | Sbjct 7119 TGATTGGCTTAGCTTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTG 7060 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAAGGTATG 173904 | |||||||| ||||| || || ||||| || || ||||| ||| || ||||||||||| Sbjct 7059 CCGAAGATCCTGAGTTTGAAACATTCTATACAAAAAATAT-CTTATTAAATGAAGGTATT 7001 Query 173905 AGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTG 173964 | || |||||| | || ||| |||||||| || || ||||| || |||||||| Sbjct 7000 CGTGCGTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTA 6941 Query 173965 TTACCAAGAGGTAACGCACTTTAA 173988 ||||| | |||||||| |||||| Sbjct 6940 TTACCTCGTGGTAACGCTCTTTAA 6917 >seq1186 Length=9024 Score = 354 bits (392), Expect = 1e-92 Identities = 354/459 (77%), Gaps = 0/459 (0%) Strand=Plus/Minus Query 172349 TAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAG 172408 ||||||| || ||||||||| ||| || || || | ||||| || || |||||||||| Sbjct 5900 TAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAG 5841 Query 172409 CAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCAC 172468 | ||||||||||| ||||| || |||||| ||||| | || ||||||||| |||||| Sbjct 5840 CTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAG 5781 Query 172469 AGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACG 172528 ||| || ||||||||||| |||||||||||||| |||||||| ||||| ||||||| Sbjct 5780 CTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACG 5721 Query 172529 GTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACT 172588 |||||||||||||| | |||||||| || ||||| ||||||||||| | | |||| Sbjct 5720 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACT 5661 Query 172589 TCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAA 172648 ||||| |||| | || || ||||||||| | ||||| || || | ||| | | || | Sbjct 5660 TCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTA 5601 Query 172649 TGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGA 172708 |||| |||||| | ||||| |||||||||||||| ||||||||||| || | ||| Sbjct 5600 TGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTG 5541 Query 172709 TTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATG 172768 | | || |||| |||| | | ||| | || ||| |||||||||| || ||||||| Sbjct 5540 TATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATG 5481 Query 172769 AAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCTG 172807 || | || || ||||||||||| ||||| | ||||||| Sbjct 5480 AACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTG 5442 Score = 228 bits (252), Expect = 1e-54 Identities = 270/366 (74%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||||| ||| | || || ||| | ||| | | || | |||||||||||||| || Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| | | | ||||| | | |||||| | |||||||| || || ||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCT 8703 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 ||||| || ||||| || ||| | || |||||| | ||||| || ||||| ||||||||| Sbjct 8702 CCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAAC 8643 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||| ||||||| ||| | || |||| ||||| || ||| | ||||||||||| || Sbjct 8642 ATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATT 8583 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 ||||||||||| | | || || ||||| ||||| ||||||||||| || || | | Sbjct 8582 TGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 8523 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | ||||||| | | ||||||| |||||||| | |||||||| |||| | | | Sbjct 8522 TGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGT 8463 Query 172180 TTAGGT 172185 |||||| Sbjct 8462 TTAGGT 8457 >seq681 Length=27805 Score = 118 bits (130), Expect = 1e-21 Identities = 126/166 (76%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||||||| ||| || || || | || || || || |||||||| ||| |||||||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || ||||| || |||||| ||||| | || |||||||| |||||| ||| || Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 172480 TACAAGTTCGGACAAGAAGA----AGAAACATACAACATAGTAGCA 172521 ||||||||||| ||||| || |||||| |||||||| |||||| Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032580828880