Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1134 581 4e-161 seq1186 378 8e-100 seq681 136 4e-27 >seq1134 Length=9887 Score = 581 bits (644), Expect = 4e-161 Identities = 750/1026 (73%), Gaps = 8/1026 (1%) Strand=Plus/Minus Query 163618 TGGTTTGATGTCCTGGATGACTGGCTTAAG-CGCGATCGTTTCGTATTTATTGGTTGGTC 163676 ||||| |||| | ||||||||| ||| | | || ||||||||||| | |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGG-TTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 7878 Query 163677 TGGATTACTACTTCTTCCCAC-TGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAA 163735 || ||| || || |||||| |||||| | ||| | ||||| ||| | |||||||||| Sbjct 7877 AGGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAA 7819 Query 163736 CTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATT 163795 | || ||||| || |||||||| ||||| | |||||||| || | || ||| ||| | Sbjct 7818 CATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACT 7759 Query 163796 TTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCT 163855 | | ||||| ||||| ||||| |||||| || |||||| || || |||||| || | | Sbjct 7758 TCTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTAT 7699 Query 163856 GGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATT 163915 |||||||||| || || || ||||| || ||| ||||||| || || | ||| || Sbjct 7698 GGGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTT 7639 Query 163916 TTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTG 163975 | || || | ||||| || |||| | | || ||||||||| | || ||||||||| ||| Sbjct 7638 TCGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTG 7579 Query 163976 CTCGC-CTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGT 164033 | || ||| | | | | | || ||||| || || |||||||| | || ||| |||| Sbjct 7578 CGCGTTCTG--TAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGT 7521 Query 164034 CTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATC 164093 ||||| ||| || | || |||||| | ||||||||| ||||||||||||| ||| Sbjct 7520 ATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAG 7461 Query 164094 TTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGAC 164153 |||||| || |||||||||||| | || | ||||| | || || || || |||||||| Sbjct 7460 TTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGAC 7401 Query 164154 TTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGC 164213 | | ||||| ||||| |||||||| ||||||||| | |||| | || || ||| ||| Sbjct 7400 TCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 7341 Query 164214 TATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTT 164273 |||||||| | || || ||||| ||||| | |||||||| || || ||||| || Sbjct 7340 AATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTT 7281 Query 164274 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 164333 || || | | ||||| | ||||| ||||| || ||||| ||||| ||| | || Sbjct 7280 CCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATT 7221 Query 164334 CTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 164393 |||||| ||||| |||||||| || ||| ||||||| || ||| | || || |||||| | Sbjct 7220 CTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCT 7161 Query 164394 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAA 164453 || || || |||| ||||| |||| | ||||| | |||||| | ||| | || Sbjct 7160 ATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAA 7101 Query 164454 TCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGA 164513 || | || || |||||||| ||| || || |||| || |||||||||||||| || Sbjct 7100 CCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGA 7041 Query 164514 GACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGT 164573 || |||||||| || || |||||||| || ||||| | ||||| ||| | || | Sbjct 7040 AACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCA 6981 Query 164574 TGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCT 164633 ||||| ||| ||||| || || ||||| ||||||||| | || | ||||| || || Sbjct 6980 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 6921 Query 164634 TTAATA 164639 |||||| Sbjct 6920 TTAATA 6915 >seq1186 Length=9024 Score = 378 bits (418), Expect = 8e-100 Identities = 352/447 (79%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 162916 ATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCA 162975 ||||| || ||||||||||| ||||| || ||||| || ||||||||| | ||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 162976 ATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAG 163035 ||||||||||| || || || ||||| | ||||||| || ||||||| || ||| Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 163036 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGT 163095 ||| ||||||||||||||||||||||||||| || ||||||||||| || || || ||| Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 163096 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTC 163155 ||||| |||||||| ||||||||||| || |||||||||||||| ||||| || |||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 163156 TTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATG 163215 ||| | ||||| ||||| ||||| | || ||||| || || | || | ||||| ||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 163216 GCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTG 163275 || |||||| | ||||| ||||||||||||||||| | | || ||| |||||||| Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 163276 TTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAG 163335 || ||||| ||||| ||| | | |||||||| || |||||||| || ||||| || Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATGAA 5479 Query 163336 CGCAATGCTCACAACTTCCCACTTGAC 163362 || || |||||||||||||| || ||| Sbjct 5478 CGTAACGCTCACAACTTCCCTCTAGAC 5452 Score = 273 bits (302), Expect = 2e-68 Identities = 283/368 (77%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 ||||| || ||||| || |||| || ||||| |||||| |||| ||| ||||||||| Sbjct 8763 CATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | ||||| |||||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 |||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 | | ||||||| | | || |||| |||||||| ||||| |||||| | |||| || Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 162743 GTCTTGGT 162750 || | ||| Sbjct 8464 GTTTAGGT 8457 Score = 100 bits (110), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 162734 TCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAG 162793 ||| ||| | | ||| ||||||||||||||| || || |||||||| || || || | Sbjct 8184 TCTATTAACATTTTG--ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTG 8127 Query 162794 CAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGC 162853 | ||| | || || ||| | |||| ||| |||||||||||||||||||||||| |||| Sbjct 8126 CTGCAACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGC 8067 Query 162854 CCTTGGGTA 162862 | || |||| Sbjct 8066 CTTTAGGTA 8058 >seq681 Length=27805 Score = 136 bits (150), Expect = 4e-27 Identities = 130/166 (78%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 162925 TTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 162984 ||||||||||| ||||| || ||||| |||||||||||| | ||| |||| |||||||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 162985 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGT 163044 || || || || ||||| | ||||||| || ||||| | || ||| ||| |||| Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 163045 TACAAGTTCGGTCAAGAAGA----AGAGACATACAACATCGTCGCA 163086 ||||||||||||||||| || ||| || ||||||||||| ||| Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557566345496600