Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1134 466 2e-126 seq1186 286 4e-72 seq681 96.9 4e-15 >seq1134 Length=9887 Score = 466 bits (516), Expect = 2e-126 Identities = 718/1021 (70%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 168480 TGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCT 168539 |||||||||| | ||||||||| | | || |||||||| || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 168540 GGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGC 168598 || || || || |||||| |||||| |||| | || |||||| | ||||| || | Sbjct 7876 GGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 168599 TTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTT 168658 || || || ||||| || || || || |||| ||| || | || || ||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 168659 TCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTG 168718 | || || || ||| ||||| || | |||||| || || ||||| || | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 168719 GGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTT 168778 ||||||||| || ||||| ||||| | |||| ||||| || || | ||| |||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 168779 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGC 168838 || || | ||||| || || | | |||||||||||||| | ||||| |||||| | || Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 168839 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 168894 ||| || ||| | ||||| ||||| || || || ||||| | || || ||| Sbjct 7577 GCGT----TCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTG 7522 Query 168895 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 168954 | || || || || | || |||||| | |||||||| ||||||| ||||| ||| Sbjct 7521 TATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAA 7462 Query 168955 CTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGA 169014 ||| || || ||||||||||||| || |||| ||| | || || ||||| ||||||| Sbjct 7461 GTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGA 7402 Query 169015 CACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTG 169074 | || || ||||| || ||||||||||| || ||| |||| || | || || | | || Sbjct 7401 CTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 7342 Query 169075 CCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTT 169134 | ||||| |||| || ||||| || || | | |||||||||| || || |||| Sbjct 7341 CAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTT 7282 Query 169135 TCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTT 169194 || || || || || || | || || || || |||||||| ||||| ||| | | Sbjct 7281 TCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGAT 7222 Query 169195 TCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGC 169254 ||||||| ||||| || ||| | || || ||| || | ||||| || ||||| |||| Sbjct 7221 TCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGC 7162 Query 169255 TGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCA 169314 | || || || |||| |||||||||| ||| | || || | ||||| | ||| | | Sbjct 7161 TATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAA 7102 Query 169315 ACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTG 169374 |||| | || ||||| |||||||| || || ||| |||| || |||||||| ||||||| Sbjct 7101 ACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTG 7042 Query 169375 AGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTA 169434 | || ||||| || || || ||| | || || |||||| ||||||| ||| | || || Sbjct 7041 AAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTC 6982 Query 169435 TTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCC 169494 || ||||| || || || || |||||||| |||||| | || || ||||| || | Sbjct 6981 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 6922 Query 169495 T 169495 | Sbjct 6921 T 6921 >seq1186 Length=9024 Score = 286 bits (316), Expect = 4e-72 Identities = 285/367 (78%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 || ||||| ||| | || ||| | |||||| | || ||||||||||||| ||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||||||||| | | |||| || ||||| ||||||||||| ||| ||| |||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 |||||| ||||||||||||||||| || |||||| |||||||| | | || |||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 ||||||| ||||||| ||| | ||| | ||||| || || ||| | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 ||||||||||| | || ||||||||||| ||||| |||||||||| |||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 167387 TTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 167446 || ||||||| | | || |||| || ||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 167447 TCTCGGT 167453 | | ||| Sbjct 8463 TTTAGGT 8457 Score = 266 bits (294), Expect = 4e-66 Identities = 343/483 (71%), Gaps = 0/483 (0%) Strand=Plus/Minus Query 167610 AACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTG 167669 || ||| | |||||||| ||||| ||| | || |||||||| ||||| || ||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 167670 TTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACT 167729 ||| || ||||||||||| | || || ||||| | | |||||||| || |||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 167730 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCT 167789 || || ||| |||||||||||||||||| |||||||| || || |||||||| ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 167790 GCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCG 167849 || || |||||||| ||||| | |||||||||||||| || ||||||||||| || || Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 167850 CTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNN 167909 | ||||||||||| || || ||||| ||||| |||| |||| Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 167910 NNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCT 167969 |||||| | ||||| ||||||||||||||||| | | || | Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 167970 GGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTT 168029 ||| || | |||||||| ||| | ||||||||||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 168030 ATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTCCACTCCT 168089 ||||| || ||||| ||||||||||||||||| ||| | ||| ||| ||| | || || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTCT 5428 Query 168090 GTG 168092 ||| Sbjct 5427 GTG 5425 Score = 134 bits (148), Expect = 2e-26 Identities = 97/112 (87%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 167454 ATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 167513 |||||||| |||||| |||||| |||||||||||||| ||||| ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 167514 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 || |||| ||| |||||||||||||||||||||||| |||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 167617 TGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTG 167676 || ||| | | ||||| ||| | || |||||||| || ||||| ||||| | ||| || Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 167677 CAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCC 167736 || |||||||||| | || || ||||| | | |||||||| || || | || || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 167737 AGAACTATGGTTACAAGTTCGGTC---AGGAA-GAAGAGACGTATAACATCGTCGC 167788 ||| ||||||||||||||||| ||||| | ||| || || |||||||| || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560590249749200